Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40696g00001 ATGACAATTTTCTACTGCGGTAAAGTGAATGTCTATGATGGAGTCTCACCGGATAAGGCACGATCAATCATGCAGCTTGCTGCATGTCCATCCTCGTTTCCTCAGGATAATCTTTTAAATAAAAATGCAGCAGTTTGGGCTTCTCCTTGCAACATACCGATTGATAAGGATGTCCTCTTTCCCAATGACACAGCAATCCTTCAGGTTGCTCAAACAG 217 0.4286 MTIFYCGKVNVYDGVSPDKARSIMQLAACPSSFPQDNLLNKNAAVWASPCNIPIDKDVLFPNDTAILQVAQT 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40696g00001 72 ProSiteProfiles Tify domain profile. 1 29 IPR010399 -
Trme40696g00001 72 SMART tify_2 1 29 IPR010399 -
Trme40696g00001 72 Pfam tify domain 1 28 IPR010399 -
Trme40696g00001 72 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 35 IPR040390 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40696g00001 1 39 Tify Gene Family AT4G14713 61.538 6.02e-12 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trme40696g00001 tify 2.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40696g00001 - - vvo:131643492 124.79