Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme406808g00001 ATGTTAATTTCCATAGAGGCTCTGAGGAGCATGACGAACAATTTCAGTGAGGAAAATAAAATAGGACAAGGAGATTCGGGAACAGTTTATAAAGGTGAACTCCCTAACAGTATAACAATTGCAGTGAAAAGAATAAAGTCAGGAGCAATAGTTGGGAGGGCTGTTTCGGAATTTGAGGCCGAAATGGCTGTTATGAGAACGGCTCGTCATCGGAATCTCGTTCTTCTTATTG 232 0.4095 MLISIEALRSMTNNFSEENKIGQGDSGTVYKGELPNSITIAVKRIKSGAIVGRAVSEFEAEMAVMRTARHRNLVLLI 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme406808g00001 77 ProSiteProfiles Protein kinase domain profile. 15 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme406808g00001 77 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Trme406808g00001 77 PANTHER OSJNBA0070M12.3 PROTEIN 1 76 - -
Trme406808g00001 77 SUPERFAMILY Protein kinase-like (PK-like) 5 76 IPR011009 -
Trme406808g00001 77 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Trme406808g00001 77 Pfam Protein tyrosine and serine/threonine kinase 18 76 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme406808g00001 Trme-Chr406808 9 240 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme406808g00001 1 77 Receptor kinase-like Gene Family AT4G21410 42.857 8.24e-16 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme406808g00001 PK_Tyr_Ser-Thr 2.7e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme406808g00001 K00924 - ini:109180505 94.3597