Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40650g00001 ATGATCCAGGTTGTTGAAGTGCCCAACGTCAGCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGCGAGAACTCCAAGAGACTGTTCAATATCCAGTGGAACACCCTGAGAAATTCGAGAAGTTTGGAATGTCACCTTCAAAGGGAGTTCTGTTCTACGGTCCTCCTGGTTGTGGTAAAACCCTTTTGGCCAAAGCTATTGCCAATGAATGTCAAGCAAACTTCATTAGTATCAAAGGTCCTGAGCTACTCACTATGTGGTTTGGAGAAAGTGAGGCTAATGTGAGAGAAATTTTTGACAAAGCTCGTGGTTCTGCTCCATGTGTCCTATTCTTTGATGAACTTGATTCTATTGCAACTCAGAGAGGTAGTAGTTCAGGAGATGCTGGTGGTGCTGCTGACAGAGTTTTGAATCAACTGCTTACAGAAATGGATGGAATGTCAGCGAAGAAAACTGTGTTTATTATCGGGGCCACTAATCGACCAGATATTATAGATCCTGCTCTACTACGACCTGGACGTCTGGACCAGTTGATCTATATCCCCCTTCCAGATGAGGATTCCCGCCATCAGATATTCAAAGCTGCCTTGAGAAAATCCCCCATCGCAAAGGATGTTGACATCAGAGCTCTTGCAAAGTACACTCAAGGCTTCAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCTATAAGGGAGAACATTGAGAAG 723 0.4412 MIQVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAALRKSPIAKDVDIRALAKYTQGFSGADITEICQRACKYAIRENIEK 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40650g00001 241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 240 IPR027417 -
Trme40650g00001 241 Gene3D - 7 183 IPR027417 -
Trme40650g00001 241 CDD RecA-like_CDC48_r2-like 21 181 - -
Trme40650g00001 241 Pfam AAA+ lid domain 205 240 IPR041569 -
Trme40650g00001 241 Gene3D - 184 240 - -
Trme40650g00001 241 PANTHER AAA-FAMILY ATPASE 4 238 - -
Trme40650g00001 241 FunFam Transitional endoplasmic reticulum ATPase 2 183 - -
Trme40650g00001 241 SMART AAA_5 46 185 IPR003593 GO:0016887
Trme40650g00001 241 ProSitePatterns AAA-protein family signature. 153 171 IPR003960 GO:0005524|GO:0016887
Trme40650g00001 241 Pfam ATPase family associated with various cellular activities (AAA) 50 183 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40650g00001 Trme-Chr40650 9 1005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40650g00001 42 241 Calmodulin-binding Proteins AT3G56690 40.887 2.06e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40650g00001 K13525 - han:110890996 473.011