Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40630g00001 ATGGACCTTTTTAATGAATGTATGGAGATTCTTGGTAATTGTCTTACTGTCTCTAAGATAGACAAGGATAGTATAGATGATGTTGTCCTTGTTGGTGGCTCTTCTAGGATTCCCAAAGTGCAGAAGCTATTGAGGGACTTTTTTAAGGGAAAGGATCTTTGCAAGAGCATCAACCCTGATGAGGCTGTTGCTTTTGGTGCAGCCGTGCAGGCCGCTTTGTTGAGTGATGGAATTAAAAATGCTCCAAACTTGGTGTTGATCGATGTTACACCACTGTCTTTAGGTTTTGGGATACAACATGATTGCATGAAGGTAGTGATTCCAAGGAACACTACCATACCTGTCAAAAGGAAGTCACGTTGTGCAACAATTACAGATAACCAACCCTCAGCCTTGATAGAGGTTTATGAAGGTGAGAGAACTAGAGCTAGTGACAACAATCTGCTTGGTTATTTTCAGCTCTCTGGGATTCCACCTGCACCTTGCGGCCATCCTATTTATGTACATTTTTCTGTTGATGAAAACGGTATTTTGACAGTTTCAGCTAAGGAATTATCCACCGGCATCATGAATGAGATTATAATAACCAATTATAAGGAGAGGTTATCGGCAGCAGAAATTAAAGAATTGATTCAAGAAGCTGAGAATTACCGTGCTGAAGATGAGAAATTCCAACAAATGGCTAAA 687 0.4032 MDLFNECMEILGNCLTVSKIDKDSIDDVVLVGGSSRIPKVQKLLRDFFKGKDLCKSINPDEAVAFGAAVQAALLSDGIKNAPNLVLIDVTPLSLGFGIQHDCMKVVIPRNTTIPVKRKSRCATITDNQPSALIEVYEGERTRASDNNLLGYFQLSGIPPAPCGHPIYVHFSVDENGILTVSAKELSTGIMNEIIITNYKERLSAAEIKELIQEAENYRAEDEKFQQMAK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40630g00001 229 Gene3D - 58 72 - -
Trme40630g00001 229 PRINTS 70kDa heat shock protein signature 57 77 - -
Trme40630g00001 229 PRINTS 70kDa heat shock protein signature 163 179 - -
Trme40630g00001 229 PRINTS 70kDa heat shock protein signature 25 41 - -
Trme40630g00001 229 PRINTS 70kDa heat shock protein signature 83 102 - -
Trme40630g00001 229 Gene3D - 7 57 - -
Trme40630g00001 229 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 81 227 IPR029047 -
Trme40630g00001 229 PANTHER HEAT SHOCK PROTEIN 70KDA 1 225 IPR013126 GO:0005524|GO:0140662
Trme40630g00001 229 SUPERFAMILY Actin-like ATPase domain 2 75 IPR043129 -
Trme40630g00001 229 Coils Coil 200 227 - -
Trme40630g00001 229 Pfam Hsp70 protein 2 227 IPR013126 GO:0005524|GO:0140662
Trme40630g00001 229 ProSitePatterns Heat shock hsp70 proteins family signature 3. 28 42 IPR018181 -
Trme40630g00001 229 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 74 229 IPR029047 -
Trme40630g00001 229 FunFam Heat shock 70 kDa protein 78 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40630g00001 Trme-Chr40630 9 695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40630g00001 1 226 Calmodulin-binding Proteins AT3G12580 61.842 7.77e-92 281