Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40599g00001 ATGACATCCTTGGAAAAGGTTCTTAAAAGTTCAGCGAATGGATTGGAGTCTAATGGAAGTGAAAGTGATGCTGCACAGAAGAGAAAGGAGGTTATTATTAGAGGAGTCCTTTCTGTTACTGTGATATCAGCTGAAGACTTGCCTGCCGTGGATTTCATGGGGAAATCTGATCCTTTTGTTGTTCTTTCATTGAAGAAAGCAGAAACAAAAAACAAAACAAGGGTTGTGAACAACAGCTTGAATCCTGTTTGGAATCAAACATTTGACTTTGTTGTAGAGGATGGATTACATGATATGCTACTTGTTGAAGTTTATGACCACGACACCTTTGGAAAG 336 0.3869 MTSLEKVLKSSANGLESNGSESDAAQKRKEVIIRGVLSVTVISAEDLPAVDFMGKSDPFVVLSLKKAETKNKTRVVNNSLNPVWNQTFDFVVEDGLHDMLLVEVYDHDTFGK 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40599g00001 112 PANTHER C2 DOMAIN-CONTAINING PROTEIN 18 112 - -
Trme40599g00001 112 MobiDBLite consensus disorder prediction 1 21 - -
Trme40599g00001 112 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 29 112 IPR035892 -
Trme40599g00001 112 Gene3D C2 domain 33 112 IPR035892 -
Trme40599g00001 112 CDD C2 37 112 - -
Trme40599g00001 112 PRINTS C2 domain signature 52 64 IPR000008 -
Trme40599g00001 112 PRINTS C2 domain signature 100 108 IPR000008 -
Trme40599g00001 112 PRINTS C2 domain signature 78 91 IPR000008 -
Trme40599g00001 112 SMART C2_3c 36 112 IPR000008 -
Trme40599g00001 112 ProSiteProfiles C2 domain profile. 17 112 IPR000008 -
Trme40599g00001 112 MobiDBLite consensus disorder prediction 1 25 - -
Trme40599g00001 112 FunFam Extended synaptotagmin-2 16 112 - -
Trme40599g00001 112 Pfam C2 domain 35 111 IPR000008 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40599g00001 35 110 C2H2 Transcription Factor Family AT4G05330 44.737 6.36e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40599g00001 - - gmx:100797374 195.282