Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40560g00001 ATGAGCTCGGCTCAGAGGCTTCTTGACTGCAAGCAATTAGTAAAAGATTATTGTTCTGAGATTTTGCCAGTGTCAGATTTGTATAAAATGCGCATCTCATGTCAGGTTGAACTAGCTGACCAATCTGAAGATTCTGCAGCTAGAACTCCACCAGAAATAATTGTGCTGCCCACAAATGCCACCGTATCTGATCTTAAGATTGAAGCAGCAAATGCTTTTCAAGACGTATATCTAATGTTTAGAAGATTTCAAGTTGACGAACTACTTGGCTACAGCGGTGTAGACGATTCCACCCAGGTCAAGCTCTTGTTAGGATCAAATGAAGTGGTTTGTGTCCGAGGAAAATGCTCCGGGAAGACTGGGTTGAGTAAGTTTCGAATGGAACGGGGACTTGAGAGGTGGACTGTGGAGTGTAACTGTGGGGCTAAAGATGATGATGGAGAGAGAATGATGGCTTGTGATACATGTGGGGTGTGGCGGCACACTCGATGTTCTGGCATTCCTGATACTGCTCCTGTTCCAGCTCGTTTTGTTTGCCAGAAATGCCAAAGTTGTGACTCAAAGCCTAAATCTGGTGGGCACTGTAAAGATGAGGAGACTGGGACTAGTGTTAGTAATACTAGTAGTAGTTGCTTTGGAAATGGCTTGCCGGTGCCTTCTGATGTTTCGTTCAGGCATTGA 681 0.4479 MSSAQRLLDCKQLVKDYCSEILPVSDLYKMRISCQVELADQSEDSAARTPPEIIVLPTNATVSDLKIEAANAFQDVYLMFRRFQVDELLGYSGVDDSTQVKLLLGSNEVVCVRGKCSGKTGLSKFRMERGLERWTVECNCGAKDDDGERMMACDTCGVWRHTRCSGIPDTAPVPARFVCQKCQSCDSKPKSGGHCKDEETGTSVSNTSSSCFGNGLPVPSDVSFRH 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40560g00001 226 SUPERFAMILY FYVE/PHD zinc finger 126 183 IPR011011 -
Trme40560g00001 226 Pfam PHD-finger 138 185 IPR019787 -
Trme40560g00001 226 ProSiteProfiles Zinc finger PHD-type profile. 135 185 IPR019787 -
Trme40560g00001 226 MobiDBLite consensus disorder prediction 185 210 - -
Trme40560g00001 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 188 IPR013083 -
Trme40560g00001 226 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 3 197 - -
Trme40560g00001 226 SMART PHD_3 137 183 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40560g00001 Trme-Chr40560 274 954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40560g00001 3 182 PHD Transcription Factor Family AT5G22260 29.319 1.78e-22 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme40560g00001 PHD 4.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40560g00001 K26271 - gmx:100818189 348.206