Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme405478g00001 GTGTTGGAGAAGAAGGAACAAAGATGTTATGGAGGAAAACATTACAGAGGAGTGAGGAGAAGGCCATGGGGTAAATTTGCTGCAGAGATTCGTGACCCTTCAAGGAAAGGAAGCAGGGTTTGGTTAGGAACATTTAACAATGAGATTGATGCTGCTAAGGCTTATGATTGTGCAGCTTTCAGAATGAGGGGTCAGAAAGCTATATTGAATTTTCCTTTGGAAGCTGGTAAAGCTAATCCAAAGCCTAATAACAGTGTCAGTGGAAGGAAAAGGAGAATACATCAGAGAGATGCTGCTACAAGTTC 305 0.4197 VLEKKEQRCYGGKHYRGVRRRPWGKFAAEIRDPSRKGSRVWLGTFNNEIDAAKAYDCAAFRMRGQKAILNFPLEAGKANPKPNNSVSGRKRRIHQRDAATSS 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme405478g00001 102 SMART rav1_2 14 78 IPR001471 GO:0003700|GO:0006355
Trme405478g00001 102 MobiDBLite consensus disorder prediction 74 102 - -
Trme405478g00001 102 Pfam AP2 domain 14 64 IPR001471 GO:0003700|GO:0006355
Trme405478g00001 102 PRINTS Ethylene responsive element binding protein signature 54 74 IPR001471 GO:0003700|GO:0006355
Trme405478g00001 102 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Trme405478g00001 102 ProSiteProfiles AP2/ERF domain profile. 14 72 IPR001471 GO:0003700|GO:0006355
Trme405478g00001 102 Gene3D AP2/ERF domain 13 74 IPR036955 GO:0003700|GO:0006355
Trme405478g00001 102 FunFam Ethylene-responsive transcription factor 2 13 74 - -
Trme405478g00001 102 PANTHER DNA-BINDING DOMAIN 13 83 IPR044808 GO:0003700|GO:0009873
Trme405478g00001 102 SUPERFAMILY DNA-binding domain 14 74 IPR016177 GO:0003677
Trme405478g00001 102 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme405478g00001 Trme-Chr405478 1 305 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme405478g00001 12 92 AP2-EREBP Transcription Factor Family AT5G07580 70.370 8.80e-39 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme405478g00001 AP2 6.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme405478g00001 - - gmx:100306125 159.073