Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40545g00001 TCTTCCCACACAAAAGAAGTAGTGATGAACTTGAAAGAGAATGAACACAAAACCCAAAGCTCTTCAAACAACAATGAAGGGAAAAATGAGAACACAAGTGAAGAGAATTTACCCAAAAGCTCTTCTAACAACAATGAAGGGAAAAATGAGAACACAATGGAAGAGAAGAATTCAAATTCAAGGCTTTTTTCATGCAACTATTGCCACAACAAATTTTCAACTCAACAAGCGTTAGCAGGACATCAAAATGCTCATCGGGCAGAACGTGCATTAGAAAAGCGACGTAAAGAAAGGCCACTTGGGGTTCGAATGGAATCATTGATTCGAAAACCACCTAGTGATAGCCCCAATATTGGTCATGGTGCTTTGAGTTTGAGAGATATGTTAAACCCATCTCTTGTTAGCTTGAAAAACAATATTGAGGGTTGCAGTAACGGGGTTGGAGTTCAAGGTATTGGTGGTGAAACTACTCCAAGGATTGAAGATGATGCCGGTAACAAATTTGTTGATTTTCTAAATCTTGGAGATTCTTCTAATGTTGATACAACTTCAAATATTATGGACCTTAATTTGAATTCAAACAATGAAGAAGAATCCTCTAATTCTGAATCTGAAT 616 0.3701 SSHTKEVVMNLKENEHKTQSSSNNNEGKNENTSEENLPKSSSNNNEGKNENTMEEKNSNSRLFSCNYCHNKFSTQQALAGHQNAHRAERALEKRRKERPLGVRMESLIRKPPSDSPNIGHGALSLRDMLNPSLVSLKNNIEGCSNGVGVQGIGGETTPRIEDDAGNKFVDFLNLGDSSNVDTTSNIMDLNLNSNNEEESSNSESE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40545g00001 205 Gene3D Classic Zinc Finger 38 110 - -
Trme40545g00001 205 MobiDBLite consensus disorder prediction 14 48 - -
Trme40545g00001 205 SUPERFAMILY beta-beta-alpha zinc fingers 60 91 IPR036236 -
Trme40545g00001 205 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Trme40545g00001 205 MobiDBLite consensus disorder prediction 182 199 - -
Trme40545g00001 205 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 96 IPR044246 GO:0009788
Trme40545g00001 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Trme40545g00001 205 MobiDBLite consensus disorder prediction 1 57 - -
Trme40545g00001 205 Pfam C2H2-type zinc finger 63 88 - -
Trme40545g00001 205 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40545g00001 Trme-Chr40545 336 1044 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40545g00001 55 124 C2H2 Transcription Factor Family AT1G80730 44.286 1.75e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme40545g00001 zf-C2H2_6 4.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40545g00001 - - tpra:123892089 243.047