Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40531g00001 ATGAAAACTGAGTTCATGGCTCTATGGGATGGATTCACTACTGACCAGAATGCCCGAGTTATGGTACTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGCTTTCCTCAAGCCTTTGAAATTGGAATGCCAAACCAGAAGGAAAGGGCTGAGATATTGAAGATTATCTTAAAGGATGAGAAGGTTGAAGATAACATAGACTTTGGTTCTATAGCTAAATCATGTAAGGGTTACACTGGATCAGATCTATTTGATCTTTGCAAAAAGGCCGCCTATTTTCCTATTAGAGAACTGCTGGATTACGAGAAGAAAGGGAAACAATCTCCTGAACCTAGACCTTTGTCGCAGTTAGATTTGGAGAAGGCCCTTTCCACTTCACGGAAGACAACGGTTGCTGCAAATGAATACTGCAGAATGAACCAACCGTCATCATCTGGCGATTCAGGTGATTATCAAGTTCAAGCTGCAATCAATGAATTCTCTAAGCTTATGATTTCTCAAATGATTAACCTCCAATCAGATTCCCAAGATCCTTAA 552 0.4076 MKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRFPQAFEIGMPNQKERAEILKIILKDEKVEDNIDFGSIAKSCKGYTGSDLFDLCKKAAYFPIRELLDYEKKGKQSPEPRPLSQLDLEKALSTSRKTTVAANEYCRMNQPSSSGDSGDYQVQAAINEFSKLMISQMINLQSDSQDP 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40531g00001 183 Pfam AAA+ lid domain 70 105 IPR041569 -
Trme40531g00001 183 ProSitePatterns AAA-protein family signature. 20 39 IPR003960 GO:0005524|GO:0016887
Trme40531g00001 183 Gene3D - 49 131 - -
Trme40531g00001 183 Gene3D - 1 136 IPR027417 -
Trme40531g00001 183 Pfam ATPase family associated with various cellular activities (AAA) 4 47 IPR003959 GO:0005524|GO:0016887
Trme40531g00001 183 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 146 - -
Trme40531g00001 183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 106 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40531g00001 Trme-Chr40531 130 902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40531g00001 1 121 Calmodulin-binding Proteins AT3G56690 33.600 1.34e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40531g00001 K22530 - gmx:100796908 286.96