Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme405261g00001 ATGGTGAAATTCTTGAAACCTAACAAGGCAGTGATTGTCCTTCAAGGCCGTTATGCCGGCAAAAAGGCGGTGATCGTTCGTACCTTCGATGACGGTACCCGTGAGAGGCCATACGGACACTGTCTTGTAGCCGGAATCAAGAAGTACCCTAGCAAGGTGATCAAGAAGGACTCTGCAAAGAAGACTGCGAAGAAATCTAGGGTTAAGGCATTCGTCAAGCTCGTGAACTATCAACACTTGATGCCAACTCGTTACACTCTCGATGTGGATCTGAA 275 0.4764 MVKFLKPNKAVIVLQGRYAGKKAVIVRTFDDGTRERPYGHCLVAGIKKYPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme405261g00001 91 Pfam KOW motif 7 32 IPR005824 -
Trme405261g00001 91 SUPERFAMILY Translation proteins SH3-like domain 2 90 IPR008991 -
Trme405261g00001 91 SMART kow_9 4 31 IPR005824 -
Trme405261g00001 91 Pfam Ribosomal L27e protein family 52 89 IPR001141 GO:0003735|GO:0005840|GO:0006412
Trme405261g00001 91 CDD KOW_RPL27 6 88 IPR041991 -
Trme405261g00001 91 Gene3D - 1 91 IPR038655 -
Trme405261g00001 91 PANTHER 60S RIBOSOMAL PROTEIN L27 1 91 IPR001141 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme405261g00001 Trme-Chr405261 1 275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme405261g00001 1 91 Cytoplasmic Ribosomal Protein Gene Family AT4G15000 87.912 2.32e-57 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme405261g00001 K02901 - gmx:100799485 170.629