Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40505g00001 ATGTACATGATGCTTCTATATAGAAATCAGAATGTTGCTGTTAAGATTATCAACAAAGGAGAAACCCCCGAAGAGATTTCCAGGAGAGAGGGTCGGTTTGGCAGAGAGGTTGCTATGTTGTCGAAAGTTCAACACAAAAATTTAGTCAAGTTTATTGGAGCCTGCAAAGAACCTGTGATGGTTATAGTAACTGAACTTCTATTAGGTGGAACTTTGCGTAAATATCTCTTGAGTATGCGACCAACGTGCTTGGATATGCGTGTGGCTGTTGGATTTGCTCTTGATATTGCTCGAGCAATGGAATGCTTACACTCACACGGGATCATTCACCGCGACCTTAAACCTG 346 0.4191 MYMMLLYRNQNVAVKIINKGETPEEISRREGRFGREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLSMRPTCLDMRVAVGFALDIARAMECLHSHGIIHRDLKP 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40505g00001 115 Gene3D Transferase(Phosphotransferase) domain 1 1 115 - -
Trme40505g00001 115 SUPERFAMILY Protein kinase-like (PK-like) 3 115 IPR011009 -
Trme40505g00001 115 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 6 115 - -
Trme40505g00001 115 Pfam Protein tyrosine and serine/threonine kinase 9 113 IPR001245 GO:0004672|GO:0006468
Trme40505g00001 115 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40505g00001 Trme-Chr40505 396 937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40505g00001 7 115 MAP Kinase Kinase Kinase AT3G27560 83.486 1.93e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trme40505g00001 PK_Tyr_Ser-Thr 4.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40505g00001 - - oeu:111392213 201.06