Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40466g00001 ATGTCTGGTACTTCTATGTCATGCCCTCATGTTTCTGGAATAGCAGCATATGTGAAGTCATTTCACCCAAATTGGACTCCTGCTGCAATCAGATCAGCTATAATGACCACAGCTAAACCTATGAGCCAGGAATTCAACAAGGAAGCAGAATTTGCTTTTGGTGCTGGTCAAGTTAATCCAACAAAAGCTCTAAATCCTGGCTTAATCTATGACATGGATGAACTTGGTTATGTTCAGTTTTTATGCCATGAGGGATATAATGGAGTTTTCATGAGAACAGTTACAAATGTAGGTCCTGGATCAACTATGTATAATGCTACTATTAAATCTCCAAAAGGAGTGGAAATTACAGTGAAACCTACTAGCCTCATTTTCTCTTATACACTGCAGAAGAAGAGCTTTAAAGTGGTGGTGAAAGCAAAGTCTATGATAAACATGAAA 441 0.381 MSGTSMSCPHVSGIAAYVKSFHPNWTPAAIRSAIMTTAKPMSQEFNKEAEFAFGAGQVNPTKALNPGLIYDMDELGYVQFLCHEGYNGVFMRTVTNVGPGSTMYNATIKSPKGVEITVKPTSLIFSYTLQKKSFKVVVKAKSMINMK 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40466g00001 147 Gene3D Peptidase S8/S53 domain 1 75 IPR036852 GO:0004252|GO:0006508
Trme40466g00001 147 ProSiteProfiles Serine proteases, subtilase domain profile. 1 64 - -
Trme40466g00001 147 ProSitePatterns Serine proteases, subtilase family, serine active site. 3 13 IPR023828 -
Trme40466g00001 147 Gene3D - 77 147 - -
Trme40466g00001 147 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 87 IPR045051 -
Trme40466g00001 147 Pfam Subtilase family 1 56 IPR000209 GO:0006508|GO:0008236
Trme40466g00001 147 Pfam Fibronectin type-III domain 85 142 IPR041469 -
Trme40466g00001 147 SUPERFAMILY Subtilisin-like 1 126 IPR036852 GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40466g00001 Trme-Chr40466 1 925 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40466g00001 1 143 Subtilisin-like Serine Gene Family AT5G59190 42.077 9.39e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40466g00001 - - ccaj:109800351 236.113