Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4045g00001 ACTGATTGCTCCTTTACTTTTCTTCAGGTTCATCCGGAAGGGAAATATGTTGTTGATATTGATAAAAATATTGACAATACGAAGCTTACTCCTTCGACTAGAGTTGCTCTCCGCAATGACAGTTATGTGCTTCATTTAGTTCTGCCAAGCAAAGTTGATCCGTTGGTCAATCTGATGAAAGTTGAGAAAGTTCCTGATTCTACGTATGACATGATTGGTGGTTTAGATCAGCAAATCAAAGAAATGAAAGAAGTCATTGAGCTACCGATTAAACACCCTGAGCTGTTTGAAAGTCTTGGAATAGCTCAACCAAAGGGTGTCTTGCTCTACGGGCCACCTGGTACAGGAAAAACTTTGCTGGCTAGGGCAGTGGCACATCATACCGATTGTACATTCATCAGGGTGTCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGGGAGCATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCCGCTCGGATGGAATCCGGAAGTGGCAATGGCGACAGTGAAGTGCAGCGCACTATGCTGGAACTTCTCAACCAGTTGGATGGTTTTGAAGCTTCAAATAAAATCAAGGTTTTGATGGCTACAAATCGGATTGATATCCTGGACCAAGCACTCCTAAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGTCTCGCCTGGATATTGTGAAAATCCATTCAAGAAGAATGAATTTAATGCGAGGGATTGATTTGAAGAAGATTGCTGAGAAGATGAATGGAGCATCTGGTGCCGAGCTTAAG 846 0.4232 TDCSFTFLQVHPEGKYVVDIDKNIDNTKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEMKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIVKIHSRRMNLMRGIDLKKIAEKMNGASGAELK 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4045g00001 282 Pfam ATPase family associated with various cellular activities (AAA) 107 240 IPR003959 GO:0005524|GO:0016887
Trme4045g00001 282 Gene3D - 60 241 IPR027417 -
Trme4045g00001 282 Gene3D - 242 282 - -
Trme4045g00001 282 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 10 282 - -
Trme4045g00001 282 ProSitePatterns AAA-protein family signature. 211 229 IPR003960 GO:0005524|GO:0016887
Trme4045g00001 282 SMART AAA_5 103 243 IPR003593 GO:0016887
Trme4045g00001 282 FunFam 26S protease regulatory subunit 8 60 241 - -
Trme4045g00001 282 CDD RecA-like_PAN_like 68 239 - -
Trme4045g00001 282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 281 IPR027417 -
Trme4045g00001 282 Gene3D - 7 59 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4045g00001 Trme-Chr4045 176 2286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4045g00001 50 281 Calmodulin-binding Proteins AT3G56690 41.379 1.58e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4045g00001 K03066 - gmx:100812783 530.406