Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme404577g00001 ATGGAGAGTTCAACGTCAGGCGGCGGCGGCGGCGGCGGTAGTCCGGCACCGTTCCTAGTGAAAACGTATGAAATGGTTGATGATTCGTGTACAGATGAGATAGTATCATGGAGTGAAAACAACAACAGTTTCATCGTATGGAATCC 146 0.4932 MESSTSGGGGGGGSPAPFLVKTYEMVDDSCTDEIVSWSENNNSFIVWNP 49
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme404577g00001 49 SUPERFAMILY "Winged helix" DNA-binding domain 14 49 IPR036390 -
Trme404577g00001 49 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 49 IPR027725 -
Trme404577g00001 49 Pfam HSF-type DNA-binding 18 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trme404577g00001 49 Gene3D - 12 49 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme404577g00001 Trme-Chr404577 1 146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme404577g00001 18 48 HSF AT4G13980 90.323 1.30e-14 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trme404577g00001 HSF_DNA-bind 9.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme404577g00001 K09419 - qsu:112012397 80.4925