Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme404209g00001 ATGGGAAGGAGACCAAGAGGAAGACCAGCAGGTTCGAAAAACAAGCCAAAACCCCCCATCATTATCACGAGAGACAGCGCAAACGCACTCCGATCCCACGTGATGGAGGTTGCGAACGGATGTGACATCATGGAAAGTGTGACGGTCTTTGCACGGAGGAGACAGCGTGGTGTCTGTATCCTCAGTGGAAGTGGGACCGTCACAAACGTGACTCTCCGTCAACCAGCATCACCTGGTGCGGTAGTCACACTTCACGGAAGATT 263 0.5323 MGRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEVANGCDIMESVTVFARRRQRGVCILSGSGTVTNVTLRQPASPGAVVTLHGR 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme404209g00001 87 MobiDBLite consensus disorder prediction 1 20 - -
Trme404209g00001 87 CDD DUF296 31 87 IPR005175 -
Trme404209g00001 87 Pfam Plants and Prokaryotes Conserved (PCC) domain 31 71 IPR005175 -
Trme404209g00001 87 Gene3D - 30 87 - -
Trme404209g00001 87 SUPERFAMILY AF0104/ALDC/Ptd012-like 27 86 - -
Trme404209g00001 87 ProSiteProfiles PPC domain profile profile. 27 87 IPR005175 -
Trme404209g00001 87 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 2 87 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme404209g00001 Trme-Chr404209 1 263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme404209g00001 3 87 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 85.393 3.48e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme404209g00001 - - gmx:100792957 174.096