Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4041g00001 ATGAAAAATGAGCTGAATGGTTCACCTCATCCAGATTCGCTACATTTATGTCTTTCTTCTCCTAATTGCAATAATCATACTTGTTTTCTTGAATCATCAACCTCTGTTACAGGGAAAATAACTTTAGGTTACTCCTCCATGATGAAATATAGCATAACTGCATACTTCCCTGGGAGAACCGACATTGAATGCTTCCATCGCTGGCAAAAGGTTTCGGATTTTGATCTTGGAAAGCGATCATGGACAAAGGAGGAGGATGAGACCTTAATTGAACTGGTAAGAAAGTATGGTTTCAAGAGATGGTCATTTATTGCAAAATTCATACCAGGTCGTATTGGAAAACAATGCCGCGAAAGGTGGCATAATAACCTTGATCCTGCTATAAAAAAAGACGCTTGGACGGAGGAGGAGGAATCGATACTTGCTCACTATCACCAAATATATGGCAGTAAATGGGCAGAAATTGCAAGGATTCTTCCTGGAAGGTACTTATTTGATACTGTTATGCAGGCTTTTCGATCTGCACTCTAA 531 0.3955 MKNELNGSPHPDSLHLCLSSPNCNNHTCFLESSTSVTGKITLGYSSMMKYSITAYFPGRTDIECFHRWQKVSDFDLGKRSWTKEEDETLIELVRKYGFKRWSFIAKFIPGRIGKQCRERWHNNLDPAIKKDAWTEEEESILAHYHQIYGSKWAEIARILPGRYLFDTVMQAFRSAL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4041g00001 176 ProSiteProfiles SANT domain profile. 76 118 IPR017884 -
Trme4041g00001 176 FunFam Transcriptional activator Myb isoform A 77 130 - -
Trme4041g00001 176 ProSiteProfiles Myb-like domain profile. 73 124 IPR001005 -
Trme4041g00001 176 SMART sant 129 167 IPR001005 -
Trme4041g00001 176 SMART sant 77 126 IPR001005 -
Trme4041g00001 176 Gene3D - 132 167 - -
Trme4041g00001 176 ProSiteProfiles Myb-like domain profile. 125 162 IPR001005 -
Trme4041g00001 176 CDD SANT 80 124 IPR001005 -
Trme4041g00001 176 Pfam Myb-like DNA-binding domain 81 139 - -
Trme4041g00001 176 SUPERFAMILY Homeodomain-like 76 163 IPR009057 -
Trme4041g00001 176 CDD SANT 132 162 IPR001005 -
Trme4041g00001 176 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 128 IPR017930 -
Trme4041g00001 176 Gene3D - 78 129 - -
Trme4041g00001 176 PANTHER MYB PROTEIN-RELATED 78 162 - -
Trme4041g00001 176 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 162 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4041g00001 Trme-Chr4041 496 1499 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme4041g00001 52 162 MYB Transcription Factor Family AT5G02320 63.063 6.79e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trme4041g00001 Myb_DNA-bind_6 3.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4041g00001 - - psat:127120714 234.187