Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme4038g00001 ATGCTGAAACTGAAGGGATGGCTGTCTTCCCAAGTATTCAAAGAGGAGTTTCCAGCCCATTTTTCTGAAGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCCATGTCTGGTCCTCTGAATTTAGCTGCAAATTTGCAACACGGGAGTGTGAAACATGACATTGGGCCATATGTCTATATTTCGTATGGTTGTGCTGACATAGAAGCTGATTCTGTGACAAAACTCTGCTGCGACTCATATGATGTGGTTAATATTATGACACATTCTGCGGATGTCCCTCTCTCTACAGAACAGCTTACAAAAATAAGAAAATTGCTGAAAAAGCACAAAGCTCTGTGTCAAGTGGAGTCTGTTGATACTGAGCAGTTACCTGAACAGGAAGTGAAAGGAATGACATTATCACATGCTGAAGAAATGGAACAAAAAGGTTTGCCGAGTATGGGGAAAGAAGGAATGGAGTTTTTTAGGAGAGTCGATAGAACATCTTGCATCTCCTCAACTGGAGCCAAAAAAGCTTCTACCCAGAGTATAGACAACAATATTTCCCAGGATGGAGAGCGCGGCATCTTTTCTGATTCTGAACCCTCTCTTGATGGAACTGTTCATACCACCAATTTGTCAGAACACAATAATCCTAGAAGTCCCTCTGAAAGCTCCAACAGTTATAAGAAAAAGTTTCCTGAGCATTCAGGTGCCCAGTGGGATGTCTTTCGTAGACAAGATATGGTTCATCCGATTCTAGATCAGAGCATTTTTCTTGACAATACTCACAAAAAGAGACTGAAGGAGGAGTTTAAGATTGAACCATGGACTTTCCAGCAACATGTTGGAGAAGCTGTTATCATTCCTGCTGGATGTCCATACCAGATAAGGAATTCTAAGTGTTGTGTCCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACCGAGTGTATCCAGTTGATTGATGAGCTCAGACAGTTACCTGAAGACCATAAAGCAAAAGTAGACAAGCTGGAG 1008 0.4147 MLKLKGWLSSQVFKEEFPAHFSEVIDALPVQEYMNPMSGPLNLAANLQHGSVKHDIGPYVYISYGCADIEADSVTKLCCDSYDVVNIMTHSADVPLSTEQLTKIRKLLKKHKALCQVESVDTEQLPEQEVKGMTLSHAEEMEQKGLPSMGKEGMEFFRRVDRTSCISSTGAKKASTQSIDNNISQDGERGIFSDSEPSLDGTVHTTNLSEHNNPRSPSESSNSYKKKFPEHSGAQWDVFRRQDMVHPILDQSIFLDNTHKKRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNSKCCVHAVLEFVSPENVTECIQLIDELRQLPEDHKAKVDKLE 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme4038g00001 336 Gene3D Cupin 1 331 - -
Trme4038g00001 336 ProSiteProfiles JmjC domain profile. 36 322 IPR003347 -
Trme4038g00001 336 Pfam JmjC domain, hydroxylase 240 300 IPR003347 -
Trme4038g00001 336 SUPERFAMILY Clavaminate synthase-like 231 334 - -
Trme4038g00001 336 MobiDBLite consensus disorder prediction 198 223 - -
Trme4038g00001 336 SMART cupin_9 17 322 IPR003347 -
Trme4038g00001 336 Coils Coil 318 336 - -
Trme4038g00001 336 MobiDBLite consensus disorder prediction 168 228 - -
Trme4038g00001 336 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 336 IPR045109 GO:0032454|GO:0033169
Trme4038g00001 336 MobiDBLite consensus disorder prediction 168 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme4038g00001 Trme-Chr4038 114 2185 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme4038g00001 JmjC 4.8e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme4038g00001 K15601 - gmx:100810673 487.648