Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme402791g00001 ATGCATCAGAAGACAATTGACATGGCTGCCGCCGCTGCCAGAACACTATGGCCAACTCAGTGGACTCGTGAAGACAACAAGCTTTTCGAGAAAGCTCTAATTACTGTGCCGGAGAATTCATCTAACCGGTGGGAGGAAATTGCTGAAAAAATTCCCGGTAAGTCGGCAGCACAAGTGAAGGATCACTACGAGGATTTGGTCCATGATATTTTGGAAATTGAATCGGGTCGGGTTGAACTTCCAAACTATCCTGATGACCTGG 262 0.4695 MHQKTIDMAAAAARTLWPTQWTREDNKLFEKALITVPENSSNRWEEIAEKIPGKSAAQVKDHYEDLVHDILEIESGRVELPNYPDDL 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme402791g00001 87 FunFam Transcription factor SRM1 14 80 - -
Trme402791g00001 87 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 13 83 IPR044636 GO:0003700
Trme402791g00001 87 Gene3D - 18 80 - -
Trme402791g00001 87 Pfam Myb-like DNA-binding domain 20 65 IPR001005 -
Trme402791g00001 87 SMART sant 17 69 IPR001005 -
Trme402791g00001 87 CDD SANT 21 67 IPR001005 -
Trme402791g00001 87 ProSiteProfiles Myb-like domain profile. 21 67 IPR001005 -
Trme402791g00001 87 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 71 IPR017930 -
Trme402791g00001 87 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme402791g00001 Trme-Chr402791 44 305 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme402791g00001 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme402791g00001 - - tpra:123883408 171.785