Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40271g00001 ATGGAGCTTGATGGGAAAGAGAAGAATTTGGAGCCAGTTTCTTCTGTGCCCGAGAACCCTGAAGTCATTCGGCCAGAACATGATATGGAAGAGAATGATGCCATGCTTAAAGCATCTGTTCCGTCACATGAGGAATTGACATTGAAAAAGGAGGAGTTCCCCTTGAAACAAGAAGTTTTGAGTCCTCCAAAACCAAGTGAAAACTTGATTCCTGCTGAAGATGGGAAAAATCAAGGCTTAAACGTTGATGTTGAAAATTCTGGACATCTTCAGAGGAAAATCTTTGGAGGATGCAGTGAACCATATTGCAATAGCAAAGCTTCTTTATCTGATGTTAAGAGCATTGATTCTAGGGCCACCAAGTCATCTAGTGATACGGGAAAAGATGTGGTTACTGGAATCATACCNAGGGGTAATTTTGTTGAAGATGCTGATGGCGGTCAGAACTCTCAGGAGAAAATTATGCAGTCAGAGATGGAGCCACGGGTTGATGTAAAACAAAAGCAGTCAAGGACTAGAAGTCTGTCCCCCAGTGCTGCGATGAAAGATGGAAACAAAAGGCCTGCAATTACATGTGCTTTTTTCGCTCAAGGTTGGTGCATCAGAGGCAGTTCTTGTAGCTTTCTTCATATAAAGGATAGTGTGAATAATACCGGCCAGGGGGTTGAAGGAGATCTAGTTACTGCACATCAGAAGAGAGAATTGAAATTGGAAAAAGGTGTTAAGGAAAATGTTGACAG 740 0.4216 MELDGKEKNLEPVSSVPENPEVIRPEHDMEENDAMLKASVPSHEELTLKKEEFPLKQEVLSPPKPSENLIPAEDGKNQGLNVDVENSGHLQRKIFGGCSEPYCNSKASLSDVKSIDSRATKSSSDTGKDVVTGIIPRGNFVEDADGGQNSQEKIMQSEMEPRVDVKQKQSRTRSLSPSAAMKDGNKRPAITCAFFAQGWCIRGSSCSFLHIKDSVNNTGQGVEGDLVTAHQKRELKLEKGVKENVD 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40271g00001 246 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 95 241 - -
Trme40271g00001 246 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 210 IPR000571 GO:0046872
Trme40271g00001 246 MobiDBLite consensus disorder prediction 1 28 - -
Trme40271g00001 246 MobiDBLite consensus disorder prediction 157 182 - -
Trme40271g00001 246 ProSiteProfiles Zinc finger C3H1-type profile. 186 213 IPR000571 GO:0046872
Trme40271g00001 246 MobiDBLite consensus disorder prediction 52 82 - -
Trme40271g00001 246 SUPERFAMILY CCCH zinc finger 186 210 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40271g00001 Trme-Chr40271 15 1014 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme40271g00001 zf-CCCH 1.8e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40271g00001 - - cam:101503101 352.829