Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40242g00001 TATATTGCTGGATCTATTGGAGCTTACCCAGAAGAATGGCTTCCAGAAAATGGAACTCACTTTGTGTTTGCCCTAATGTTCTCAATATCTGTAGTGGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCGACGGCTGTCATGGTGGCAACAGGAGTCGGGGCAAACAATGGAGTATTAATTAAAGGAGGAGATGCTTTGGAAAGGGCTCAGATGGTGAAGTCTCTTGGTGTGGTCCCGGTCATTAGCCCGTTGTCGCTCCCGGTTCTCTCCAAACTCATTGTTGTAAACAGCGACCGGAAACTAAAGTTAAACAAACAACGGAATTTTATCAGAGTTCGACCAATTGTGCTTACGACTTTGACAGCAGAGCGGCTTCTATGA 387 0.4625 YIAGSIGAYPEEWLPENGTHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKSLGVVPVISPLSLPVLSKLIVVNSDRKLKLNKQRNFIRVRPIVLTTLTAERLL 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40242g00001 128 Pfam E1-E2 ATPase 21 57 - -
Trme40242g00001 128 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 69 IPR023298 -
Trme40242g00001 128 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 76 - -
Trme40242g00001 128 Gene3D - 4 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40242g00001 Trme-Chr40242 159 969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40242g00001 2 75 Primary Pumps ATPases AT5G44790 87.838 7.69e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40242g00001 K17686 - gmx:100804960 148.673