Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme40210g00001 | ATGACAACAATCAGTCTCCGGAAAGGAAACACACGACTCCCACCGGAAGTTAACCGCGTCCTCTACGTCCGCAACCTTCCCTTCAACATCACCAGCGAAGAAATGTACGATATATTCGGCAAATACGGTGCAATTCGTCAGATCCGAATCGGAACCAACAAAGACACTCGCGGCACTGCTTTCGTCGTTTATGAAGATATCTACGACGCTAAAACCGCCGTCGATCATCTCTCCGGATTCAATGTTGCGAATCGGTATCTTATTGTTCTTTATTATCAACAAGCGAAGATGAGTAAGAAATTTGATCAGAAGAAGAAGGAAGATGAAATTGCGAGGATGCAGGAGAAGTATGGTGTTTCTACTAAAGACAACAAGTAG | 378 | 0.4418 | MTTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVSTKDNK | 125 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme40210g00001 | 125 | SMART | rrm1_1 | 20 | 90 | IPR000504 | GO:0003723 | |
| Trme40210g00001 | 125 | Gene3D | - | 15 | 120 | IPR012677 | - | |
| Trme40210g00001 | 125 | CDD | RRM_SF3B14 | 17 | 93 | IPR034150 | - | |
| Trme40210g00001 | 125 | PANTHER | RNA-BINDING MOTIF PROTEIN, X-LINKED 2 | 21 | 109 | - | - | |
| Trme40210g00001 | 125 | FunFam | splicing factor 3B subunit 6-like protein | 15 | 118 | - | - | |
| Trme40210g00001 | 125 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 21 | 87 | IPR000504 | GO:0003723 | |
| Trme40210g00001 | 125 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 19 | 94 | IPR000504 | GO:0003723 | |
| Trme40210g00001 | 125 | SUPERFAMILY | RNA-binding domain, RBD | 7 | 102 | IPR035979 | GO:0003676 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme40210g00001 | 7 | 120 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 27.350 | 5.38e-07 | 45.4 |