Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40194g00001 AGAGAGAGTACAGCTGACAGGGCAAAATTCAACAATGTTTTTGTTAAGAATCTCTCAGAATCAACCACTGACGATGAGTTGAAGAAGATTTTTGGTGAATTTGGAACAATTACCAGTGCTGTAGTAATGAGGGATGGGGATGGGAAATCAAAGTGCTTTGGATTTGTAAACTTTGAGAGTACCGATGATGCTGCTAGGGCTGTTGATGCTCTTAATGGGAAAAAAATTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAACTAAAAGTTAAATTTGAGCAGAGCATGAAAGAGGCCGCGGATAAATATCAAGGGGCGAACTTGTATGTAAAAAATTTGGACGATAGCATTGTTGATGATAAACTTAAGGAGTTGTTCTCCTCTTTTGGTACAATTACCTCTTGCAAGGTAATGAGAGACCCCAATGGCATAAGTCGAGGATCTGGGTTTGTTGCATTCTCTACTCCTGAGGAGGCATCTAGAGCACTTTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTTTGTATGTGACTCTGGCCCAGCGGAAAGAAGATAGGAGAGCCAGGCTGCAGATAATAGAATTGGTGCAAACATGTGAACTGGTTCAAATCAGCAAAGCTTTTGATGATTTTGTGGTAGATAATTAA 675 0.4015 RESTADRAKFNNVFVKNLSESTTDDELKKIFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVDALNGKKIDDKEWYVGKAQKKSEREHELKVKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQIIELVQTCELVQISKAFDDFVVDN 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40194g00001 224 PRINTS Paraneoplastic encephalomyelitis antigen family signature 119 134 IPR002343 GO:0003723|GO:1990904
Trme40194g00001 224 PRINTS Paraneoplastic encephalomyelitis antigen family signature 11 26 IPR002343 GO:0003723|GO:1990904
Trme40194g00001 224 PRINTS Paraneoplastic encephalomyelitis antigen family signature 101 118 IPR002343 GO:0003723|GO:1990904
Trme40194g00001 224 PRINTS Paraneoplastic encephalomyelitis antigen family signature 134 146 IPR002343 GO:0003723|GO:1990904
Trme40194g00001 224 Gene3D - 100 200 IPR012677 -
Trme40194g00001 224 Gene3D - 1 99 IPR012677 -
Trme40194g00001 224 FunFam Polyadenylate-binding protein 97 202 - -
Trme40194g00001 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Trme40194g00001 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 81 IPR000504 GO:0003723
Trme40194g00001 224 SMART rrm1_1 12 84 IPR000504 GO:0003723
Trme40194g00001 224 SMART rrm1_1 115 187 IPR000504 GO:0003723
Trme40194g00001 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Trme40194g00001 224 SMART rrm2_1 115 187 IPR003954 GO:0003676
Trme40194g00001 224 SMART rrm2_1 12 84 IPR003954 GO:0003676
Trme40194g00001 224 FunFam Polyadenylate-binding protein 1 96 - -
Trme40194g00001 224 CDD RRM4_I_PABPs 113 191 - -
Trme40194g00001 224 CDD RRM3_I_PABPs 10 89 - -
Trme40194g00001 224 PANTHER RNA BINDING PROTEIN 6 199 - -
Trme40194g00001 224 SUPERFAMILY RNA-binding domain, RBD 11 194 IPR035979 GO:0003676
Trme40194g00001 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40194g00001 Trme-Chr40194 3 957 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40194g00001 1 200 Eukaryotic Initiation Factors Gene Family AT1G49760 77.000 1.71e-112 335