Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40132g00001 ATGCCATTACCTGGTCAATTCACTGTTATAACAGCACAATCGCGAGATAACCCTGATGAAGATACAGGAATCTCAATCCAAAACTGTTCAATTATAGCTACTGATGAACTTTATTCAAACTCTAGTAGATTCAAGAGTTACCTTGGAAGGCCATGGAGGGTATTTTCAAGAACTGTTTTCATTGAATCTTACATTGACGATTTTATTGATCAAAAGGGTTGGACAAAATGGTCTAATGATCAAGGTTTGGATACTTTGTTTTATGGTGAGTACGAAAATTATGGACCTGGTTCGAAGATTGATAATCGCGTTGAATGGGTTGGTTACCATTTAATGGATTATAATGATGCATATAATTTTACAGTTTCAGAGTTTATTACCGGTGATGAATGGCTTGAGTCTACTTCAGTTCCTTATGATGACGGGATTTGA 432 0.3588 MPLPGQFTVITAQSRDNPDEDTGISIQNCSIIATDELYSNSSRFKSYLGRPWRVFSRTVFIESYIDDFIDQKGWTKWSNDQGLDTLFYGEYENYGPGSKIDNRVEWVGYHLMDYNDAYNFTVSEFITGDEWLESTSVPYDDGI 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40132g00001 143 Gene3D - 2 143 IPR012334 -
Trme40132g00001 143 Pfam Pectinesterase 2 129 IPR000070 GO:0030599|GO:0042545
Trme40132g00001 143 PANTHER PECTINESTERASE 2 133 - -
Trme40132g00001 143 SUPERFAMILY Pectin lyase-like 3 140 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40132g00001 Trme-Chr40132 395 826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40132g00001 1 143 Carbohydrate Esterase AT2G26440 67.133 6.71e-69 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40132g00001 - - psat:127136348 289.271