Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40118g00001 CAACCACCAATCAAGCCAATTAACAATCAGATAAGTTTAGCAGAGATTGATACAATCAAAGTGATTGGAAAAGGAAATGGAGGGATAGTTCAATTGGTGCAACACAAATGGACTAATCAATTTTTTGCATTAAAGCAAATTCAAATGACTCTTGAGGAATCTACATGCAGGCGAATAGCGCAAGAGCTAAAAATCAATCAATCATCACAATGTCCTCATGTTGTTGTTTGCTACCAAACAATCTATTATAATGGCACCATATCAATCATCTTAGAGTATATGGATGGAGGGTCCTTAGAGGATCTTCTTAACAAAGTTAAAACAATTCCAGAACCATTTCTTGCTGCTATTTGCGTGTCTGGTGTCCAACACGTCTCTGTGTACGACGCCGACACGACACTGACACATGAGGTGTTGAAGGGTTTGATGTATCTTCACCATGAGAAACACATTATCCATAGGGACTTGAAACCTTCTAATATATTGATAAATCATAGAGGGGAGGTAAAGATTACTGATTTTGGTGTAAGTATAATCATGGAGACTACATCTGGTCAAGCAAATACTTTCATCGGTACATACAACTATATGTCTGTGAGTAAAATATTATGA 612 0.3693 QPPIKPINNQISLAEIDTIKVIGKGNGGIVQLVQHKWTNQFFALKQIQMTLEESTCRRIAQELKINQSSQCPHVVVCYQTIYYNGTISIILEYMDGGSLEDLLNKVKTIPEPFLAAICVSGVQHVSVYDADTTLTHEVLKGLMYLHHEKHIIHRDLKPSNILINHRGEVKITDFGVSIIMETTSGQANTFIGTYNYMSVSKIL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40118g00001 203 Pfam Protein kinase domain 18 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme40118g00001 203 Gene3D Transferase(Phosphotransferase) domain 1 96 200 - -
Trme40118g00001 203 SUPERFAMILY Protein kinase-like (PK-like) 16 198 IPR011009 -
Trme40118g00001 203 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Trme40118g00001 203 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Trme40118g00001 203 Gene3D Phosphorylase Kinase; domain 1 4 95 - -
Trme40118g00001 203 ProSiteProfiles Protein kinase domain profile. 16 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme40118g00001 203 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 10 198 - -
Trme40118g00001 203 FunFam Mitogen-activated protein kinase kinase 1 1 95 - -
Trme40118g00001 203 SMART serkin_6 16 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40118g00001 Trme-Chr40118 115 1013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40118g00001 3 203 MAP Kinase Kinase Gene Family AT4G29810 61.692 9.24e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trme40118g00001 Pkinase 2.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40118g00001 K20603 - gmx:100789241 296.204