Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40090g00001 ATGTTGATTTTTATGATGACAGAATATGCCTACACTAGTAACGTGACAGAGAAGAGCGATGTTTACAGCTTTGGCGTAGTACTGATGGAGTTGGTCACAGGGAAGAAGCCTGTGGAGCCAGAGTTTGGAGAGAATAAGGATATTGTCAGTTGGGTATGTAGCAACTTTAGGAGCAAAGAAAGTGTACTCGAATTGGTGGATTCTACCATTGCAAAGCATTTCAAAGAAGATGCTATTAAGGTGTTGAGAATTGCGACATTGTGTACCGCGAAAGTTCCATCTTCAAGACCATCAATGAGAAAGTTGGTCCAAATGTTGGAAGAGGCAGAGCCATCAGCCATGTTCTCCAACAAAGTGATTGTCACCATAGATGGTTAA 378 0.418 MLIFMMTEYAYTSNVTEKSDVYSFGVVLMELVTGKKPVEPEFGENKDIVSWVCSNFRSKESVLELVDSTIAKHFKEDAIKVLRIATLCTAKVPSSRPSMRKLVQMLEEAEPSAMFSNKVIVTIDG 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40090g00001 125 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 112 - -
Trme40090g00001 125 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme40090g00001 125 SUPERFAMILY Protein kinase-like (PK-like) 5 110 IPR011009 -
Trme40090g00001 125 Pfam Protein tyrosine and serine/threonine kinase 4 106 IPR001245 GO:0004672|GO:0006468
Trme40090g00001 125 Gene3D Transferase(Phosphotransferase) domain 1 2 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40090g00001 Trme-Chr40090 560 937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40090g00001 8 111 Receptor kinase-like Gene Family AT1G09970 67.308 2.61e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme40090g00001 PK_Tyr_Ser-Thr 1.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40090g00001 - - lja:Lj1g3v4156030.1 201.83