Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40082g00001 GATTTATCTCAAAATAGAGGAGCAACAGTAGAATCAATCAATTCTCTACCAGTCTACAAGTTCAAAGTGAAGAACAATGAAAATGGTGTTGATCAGAATATCAACACAGCTTTAGAAGAATGTGGGATTTTGGCTGCAGGGACAGAAAAAGAGCGAATACTCTCGGGAAAAGATGCTGTTTGCTGCATTTGCTTGGCAAAATATGCAGATAATGATGAACTTAGAGAGTTACCTTGCTCGCACGTATTTCATGTTCGATGTGTTGACAAATGGTTAAAGATAAATGCATCTTGTCCTCTTTGTAAAAGTGAAGTTGGTGCCAGTAATTAA 330 0.3727 DLSQNRGATVESINSLPVYKFKVKNNENGVDQNINTALEECGILAAGTEKERILSGKDAVCCICLAKYADNDELRELPCSHVFHVRCVDKWLKINASCPLCKSEVGASN 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40082g00001 109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 109 IPR013083 -
Trme40082g00001 109 ProSiteProfiles Zinc finger RING-type profile. 61 102 IPR001841 -
Trme40082g00001 109 Pfam Ring finger domain 61 102 IPR001841 -
Trme40082g00001 109 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 105 - -
Trme40082g00001 109 SMART ring_2 61 101 IPR001841 -
Trme40082g00001 109 FunFam E3 ubiquitin-protein ligase 44 109 - -
Trme40082g00001 109 SUPERFAMILY RING/U-box 52 106 - -
Trme40082g00001 109 SMART ringv_2 60 102 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40082g00001 Trme-Chr40082 119 633 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40082g00001 1 109 C3H Transcription Factor Family AT1G80400 58.182 7.38e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40082g00001 - - gmx:100819516 196.823