Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme40037g00001 TTGCTCGCTCCAGGCCTAAGTTTGTCAAGTGAGTATAAAGTACCGGAGGAAGTTAAAGCTGCAGGTTTTGAAATTTGTGCTGATGAGGCAGGATCAATTGTTGATGGACGTGATGTGAAGAAGTTGAAAATTCATGGTGGGATTGAGGCGGTTGGCATAATAATGGAAGGGTGGCCTAAGGGTGCACAAGATGGGATTGGTATTGTTGCAAGCATATTGCTTGTAGTGTTTGTCACTGCCACTAGCGATTATAGACAATCATTGCAGTTTAAGGATTTAGACAAAGAGAAGAAAAAAATTACAGTTCAGGTCACGCGAAATGGATATAGACAGAAAATTTCAATATATGATCTACTTCCTGGTGATATTGTTCATCTTAATATTGGAGATCAAGTACCTGCTGATGGACTTTTTTTGTCCGGTTTTTCTGTGTGTATAAATGAATCAAGTTTGACAGGAGAAAGTGAACCAGTGAATGTCAGCGACCTTAATCCTTTTCTTTTATCCGGAACCAAAGTCCAAGATGGATCATGCAAGATGCTTGTGACTACTGTTGGAATGAGAACTCAGTGGGGTAAACTAATGGCTACTCTAAGTGAAGGGGGAGATGATGAAACTCCCTTGCAGGTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANCAAGAAGGTTCCCAATGGACATGGTCTGGTGATGATGCTATGGAAATTGTGGAATTCTTCGCTATTGCTGTTACAATTGTTGTTGTTGCTGTTCCTGAAGGTTTACCTTTAGCTGTGACATTG 852 0.3592 MLAPGLSLSSEYKVPEEVKAAGFEICADEAGSIVDGRDVKKLKIHGGIEAVGIIMEGWPKGAQDGIGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKITVQVTRNGYRQKISIYDLLPGDIVHLNIGDQVPADGLFLSGFSVCINESSLTGESEPVNVSDLNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEGSQWTWSGDDAMEIVEFFAIAVTIVVVAVPEGLPLAVTL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme40037g00001 284 SUPERFAMILY Calcium ATPase, transduction domain A 100 196 IPR008250 -
Trme40037g00001 284 Pfam E1-E2 ATPase 99 210 - -
Trme40037g00001 284 Coils Coil 244 245 - -
Trme40037g00001 284 Gene3D - 75 200 - -
Trme40037g00001 284 PANTHER CATION TRANSPORTING ATPASE 50 284 - -
Trme40037g00001 284 FunFam Calcium-transporting ATPase 79 199 - -
Trme40037g00001 284 Coils Coil 210 210 - -
Trme40037g00001 284 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 284 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme40037g00001 Trme-Chr40037 3 1049 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme40037g00001 10 61 Primary Pumps ATPases AT2G22950 63.462 2.85e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme40037g00001 K01537 - lja:Lj1g3v1720240.1 359.762