Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3g00003 ATGCGTATCTCTCACAAAAAGTACGATGTATTCATAAGCTTTAGGGGAGAGGACACACGTACAAACTTCACTGCCCAGCTTCATCAAGCTCTTACCAATAGAAACATTGAATCATACATTGATTATAATCTTGTTAAGGGACATGAGGTTGGGCCTGCTCTTGCAAAAGCAATTGAGGACTCACATATGTCTCTTGTAGTTTTCTCAGAAAACTATGCAACCTCAAAATGGTGCTTGGATGAACTCCTCCACATACTCAAATGCAGAGAGCTTTATGGACAAGTGGTTATACCTGTGTTCTGTAACATAGATCCATCACATGTACGTAAGCAGACAGGGAGTTACCAGATGGCATTTGCAAGATATGAGAGAGATCTCTCCAAATCACCATCTCATGTAAACAAAGTGTCCGAGTGGAAAGATGGTCTCACTCAGGCTGCCAATATATCTGGATGGGATTCTCGCAAATATAGGGATGATTCTCAAGTCATCGACAATATTGTGGAAGATGTTTTGCAGAAGTTATCCCTAATGTTTCCTAATGAACTGAAAGACCTTGTTAAAGTCGATGAAAACAGTGAACATATTGAATTATTAGTGAAAACAATACCGAGAATTGGAATTTGGGGTATGAGTGGAATAGGAAAGACAACCATAGCCATACAGATGTTTGCCAAGAACTTTGCCCATTATGACAATGTATGCTTCTTGGAAAAGGTAAGCGAAGAATCAAATAAGTTTGGACAAACATATGTTCGTGATAAGCTTCTTAGTAAGCTACTGAAGCGAGAAATTACTGCATCTGATGTTCATGGACCGCACGCATTCATCAAGAGGAGGCTTAGTGGTAAAAAAAGTTTCATTGTACTTGATGATGTTGATAATGCTACACAATTAGACGATTTATGTGGAGTGCTTAATGACCTTGGACCTAACAGTAGACTCATTATCACAACAAGAGACAGGCATACACTTAGTGGAAAAGTTGATGAAATTTATGAGGTAACAACATGGAAGCTTAAAGACTCTCTAAAGCTTTTTAGTTTAGGAGCCTTCAAGCAAAGCCATCCTAGAAAGGGTTACGAGCGTATCTCCGAAAGAGCAGTTGAATATGCAGGAGGTGTTCCATTAGCTTTAAAAGTTTTGGGTTTACATTTTCATTCCAAAACATCAAAATTCTGGGAATCTGAGTTGAATGATTATGAGAACAAGGGAGAAGCCTTCCAAAAAATTCAAAAAGTTCTAAGAGTGAGTTATAATGTGTTATCATGGAGACAAAAGGAAATGTTTCTAGACATTGCATTCTTTTTCAAAGGTGAAAACAAAGACTTCGTCACAAGGATATTAGATGCCTTTGGTTTCAATGCAACTAGTGGGATAGAAATCCTCGAAGATAAAGCTCTTATAACTATTTCAAACAACAGTAGAATACAAATGCACGACCTATTACAAAAGATGGCCTTTGATATAGTTCAAGAAGATTATATTGACCGAGGAAAGCGTAGCCGACTGAGGGATGCTAAAGACATTTGTGATGTACTTGRAAATAACAAGGGGAGTGATGCAATTGAAGGAATCATATTTGATTTGTCTCAAAAACTAGATTTACATGTTCAAGCTGACACATTCCACTTGATGACTAAATTAAGATTTCTTAAATTCCACATCCCCAAGGGTAAGAAGAAATTGGGCAACGTGCATATTCCTGAAAATAGTATGCCATTTTTTGACAAATTGATGTACCTTGAGTGGAATGGGTATCCCTTGAAGTCGCTCCCACAACCTTTTCGTGCTGAGCAGCTGATTAAGATTTGTTTGCCGCACAGCAACATTGAACATCTTTGGTACGGAATGCAGGAACTAGTGAATTTAGAGGCAATCGACCTAAGTGAGTGCAAACAGTTGATCAACCTCCCTGATTTGTCTGGGGCATTAAAACTCAAACAGTTGCGCCTTTCTGGTTGTGAAAATTTATGTGAAGTTCAGGCTTCTGCTTTTTCTAAGGACACACTTCATACTTTGCTACTGGATAGGTGCACAAAATTGCAAAGCCTGATGGGTGAGAAGCATTTAACATCTCTAGCGAACTTCAGTGTCAAAGGCTGCTCAAGTCTGAAGGAATTTTCGCTGTCCTCGGATTCAATAAAAAGTGTTGTAACTAAATCAAAGTTAGAAGTTCTTTTTGCTGGTCTGGGATCATTAGCATTATTACACTTGAAAGACTGTTTTAATTTGCTTGAACTCCCTGAAAACATTAGTTCCTTATCATCATTGCATGAATTAAGACTAGATGGAAGCAGTGTGAAGGAGTTGCCTGCTAGCATCAAGTACCTCTCAGAGCTAGAAGTTCAGTCTTTAGACAATTGCAGTAATCTTTCTTTTCTTCCTGAACTTCCTTCAAGCATCAAAGAGTGTCATGCCGACAACTGCACCTCGTTAGTGACAGTATCCACTTTGAAGACTTTTTCAATAATCATGATTGGAAGGAAAAAATGCATTTCATTTAAGAATAGCATTAAGCTGGTATTGGATGGACCCTCCCTTGACTGCATTACGGAAGATGCCATGTTAACAATGAAAAGTGCTGCCTTTCACAATGTATTAGTGAGAAAGTACAGATTCCAAACCCACAGTTACAATTATAACAGTGCTGTGTGGTTGTTTCTCCATACAACAGACTACAGACTGGATACTCTGTTAAAATCCTATGTCAATGTTATTCGGAAAATGGAAGGAGGACGGTGGGATATAACTCTTGGTGGGATCATAAACCGATTACGAATTTGA 2787 0.3843 MRISHKKYDVFISFRGEDTRTNFTAQLHQALTNRNIESYIDYNLVKGHEVGPALAKAIEDSHMSLVVFSENYATSKWCLDELLHILKCRELYGQVVIPVFCNIDPSHVRKQTGSYQMAFARYERDLSKSPSHVNKVSEWKDGLTQAANISGWDSRKYRDDSQVIDNIVEDVLQKLSLMFPNELKDLVKVDENSEHIELLVKTIPRIGIWGMSGIGKTTIAIQMFAKNFAHYDNVCFLEKVSEESNKFGQTYVRDKLLSKLLKREITASDVHGPHAFIKRRLSGKKSFIVLDDVDNATQLDDLCGVLNDLGPNSRLIITTRDRHTLSGKVDEIYEVTTWKLKDSLKLFSLGAFKQSHPRKGYERISERAVEYAGGVPLALKVLGLHFHSKTSKFWESELNDYENKGEAFQKIQKVLRVSYNVLSWRQKEMFLDIAFFFKGENKDFVTRILDAFGFNATSGIEILEDKALITISNNSRIQMHDLLQKMAFDIVQEDYIDRGKRSRLRDAKDICDVLXNNKGSDAIEGIIFDLSQKLDLHVQADTFHLMTKLRFLKFHIPKGKKKLGNVHIPENSMPFFDKLMYLEWNGYPLKSLPQPFRAEQLIKICLPHSNIEHLWYGMQELVNLEAIDLSECKQLINLPDLSGALKLKQLRLSGCENLCEVQASAFSKDTLHTLLLDRCTKLQSLMGEKHLTSLANFSVKGCSSLKEFSLSSDSIKSVVTKSKLEVLFAGLGSLALLHLKDCFNLLELPENISSLSSLHELRLDGSSVKELPASIKYLSELEVQSLDNCSNLSFLPELPSSIKECHADNCTSLVTVSTLKTFSIIMIGRKKCISFKNSIKLVLDGPSLDCITEDAMLTMKSAAFHNVLVRKYRFQTHSYNYNSAVWLFLHTTDYRLDTLLKSYVNVIRKMEGGRWDITLGGIINRLRI 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3g00003 928 Gene3D - 4 175 IPR035897 -
Trme3g00003 928 SUPERFAMILY L domain-like 528 853 - -
Trme3g00003 928 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 711 IPR044974 GO:0006952
Trme3g00003 928 Gene3D - 176 332 IPR027417 -
Trme3g00003 928 Pfam NB-ARC domain 206 412 IPR002182 GO:0043531
Trme3g00003 928 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Trme3g00003 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 433 IPR027417 -
Trme3g00003 928 Gene3D Ribonuclease Inhibitor 457 853 IPR032675 -
Trme3g00003 928 Gene3D - 339 423 IPR042197 -
Trme3g00003 928 Pfam TIR domain 7 183 IPR000157 GO:0007165
Trme3g00003 928 SUPERFAMILY "Winged helix" DNA-binding domain 410 514 IPR036390 -
Trme3g00003 928 ProSiteProfiles TIR domain profile. 6 175 IPR000157 GO:0007165
Trme3g00003 928 PRINTS Disease resistance protein signature 280 294 - -
Trme3g00003 928 PRINTS Disease resistance protein signature 372 386 - -
Trme3g00003 928 PRINTS Disease resistance protein signature 619 635 - -
Trme3g00003 928 PRINTS Disease resistance protein signature 205 220 - -
Trme3g00003 928 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 177 - -
Trme3g00003 928 SMART till_3 7 149 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3g00003 Trme-Chr3 9409 13274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3g00003 4 782 WRKY Transcription Factor Family AT4G12020 29.697 3.63e-83 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3g00003 - - psat:127076353 1389.02