Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3g00002 ATGGTGTTTGGAAGAACTGGTCAAAGTGTTGGAATGCAGAAAAAAGAATGGTCACATCAAATTGTTATACCTGTTTTCTATAAAACAGATCCGTCACACATAAGAAAACAGACTGGCAGTTATAAGAATGCATTCGCGAAACATGAGCGAGATCTTTGGACCAAAGAAGCTAACAAAGTTCGTAAGTGGAAAGCTGCCCTTACTGAAGCAGCTAATATATCTGGATGGGACACTCAAACCCACAAGGATGAACCTAACATGATCCACAAAATTGTGAATGATGTATTGCAAAAGCTACGACTGAGGTACCCGAATGAACTAGAAGGGTTCGTGAGAAACGAAAAAAACTGTGAATGTGTAGAATCATTAGTGGAAAATGTTCAAATAGTTGGAATTTGGGGTATGGGCGGAATGGGAAAGACAACCATTGCAAAAGCCTTGTTTGCCAAATATTTTGCCCAATATGACCATGTTTGCTTCGCTAGAGCAAAAGATTATTCACCTAGTAAGCTTCTCTCTGAGCTACTAAAGGAAGAATTTCCCGCATCTGATGATGTTGCAATATCTACATTTCATATGAGGAGACTGGCAAGTAGTAAAGTTTTGATTGTAGTTGATAATGTGGACAGTTTAGATCAGTTTAAATATTTATGCACAGATTACGGTGAGCTACATAAGGATAGCAGACTCATTATAACAACAAGAGACAGACAATTGCTGAGCGGAACAGTTGATTGGATATATGACGTCATTGAATGGGAAAATTCAAAATGTCTAGAGCTTTTTTGCCTAGAAGCCTTCGTGCCAAGTCATCTCCGAGAGAATTACGAGCATCTCTTGCAAAGGGCAATCACTTATGCAGGGGGTGTTCCTCTGGCCGTTAAAGTTTTTGCCTTACTTCTTCGTGCAAGAGAGATTGAATTTTGGGAAAGTGCTTTTAGTAAACTGGACACGCATTCTAATGCAGCGATGCATGAAGTTTTAAAATTGAGCTATGATGACTTAGATGAACCACAGAAGAAGATATTTCTGGACATAGCATTCTTTTTCATAGGAGAAAACAAAGATTGTGTCGCAAGGATACTAGATTCTTGCGCTTTCAAAGGAAGTACAAGTAGTGAAATAGTAATCCTCAAAGACAAGGCTTTGATAACTATCTCAAATGACCATACAATACAAATGCACGACTTGCTGCAAAAAATGGGTTCGGACATAATATGTAATGATTGTGGCACGGACCCGGCCACACATACCCGACTGAAGGGAAGAGCAGCTCTTGAAGTAATTGAAGAAAACAAGGGGAGTAGCTCCATTGAAGGCATAACGTTGGATTTATCTCAAAATAATGATTTCCCTCTAAGTGCAGATACCTTCACCAAGATGAAAGGCTTAAGAATTCTTAAATTCTATTCACCCTCTAACCAGAGTTGTACTAATACATACCTCAACCTTCCCGAATTTCTTGAGCCATTTTCAAAAAATAAACTGAGGTATTTTGAGTGGAATGGATACCCTTTTGAGTCTCTTCCACAACCTTTTTATGCGAAGTTTCTTGTTGAGATCTGCATGCCGCACAGCAACATTAAACAACTGTGGCAGGGGATACAGGAACTTGATAAATTGGAGGGCATTGACCTGAGTGAATGCAAGCATTTTGTACTCCTTCCGGATTTGTCTAAGGCGTCAACACTTAAATGGATTAATCTCTCTGGTTGTGAGAGTCTGGTTGATCTTATTCATCCATCTGTTTTATGCACAGATACACTTGTTACTTTGATACTGGATAGGTGTACAAAGGTTAGGAGTGTTAGAGGTGAAAAACATTTAAATTTTTTGGAGAAGATCAGTGTGGATGGGTGCACAAATCTTGAGGAATTTGCTGTGTCGTCAGATTTAATTGAAAACTTGGATTTAAGCAGTACAGGGATCCAAACACTGGACCTATCAACTGGTCGTCTTCACAAACTTAAACGACTTAATCTAGAGAGTTTAAGACTCAAACATCTTCCAAAGGAGTTATCTAGTGCAAGATCTATTATGGAATTGAAGATTTCTGGCAGCAAACTAATAGTTAATAAACAACAGCTACATGAGCTGTTTGATGGCTTACGATCCCTACAAATACTACACATGAAGGATGTTATAAACCAATTTGAACTCCCAGACAACGTTGGTGTTTTATCAAAGTTAATGGAATTAAACCTTGATGGAAGCAACATGAAGAGGTTGCCTGAAAGCATTAAAAAACTTGAAGAACTGGAAATTCTTTCTTTGGTGAATTGCAGGGAGCTTGAGTGCATACCGGAGCTTCCCCCTCTCATCACACTGTTAATTGCAATTAACTGCACGTCACTGGTTTCAGTGTCAAGTCTAAAAAACTTAGCAACAAAGATGATGGGAAAAACCAAACACATTTCATTCAGTAACAGCTTGAATTTGGATAAACATTCACAAAACCTTATAATGGAAAGTCTCAAGCTAACAATGATGAGTGCTGTGTTTCAAAATGTGTCTGTAAGAAGACTCCGTGTGGCCGTTCACAGCTACAACTATAGCAGTGTTGATGCTTGTCAACCAGGAAAATGTGGAAATGGAGTGAAGAAGGGTGAAGCTAGAATAAAGTGTCAATGCAACTTGGCAGAAGAAGGTATAAAGGCTTCCCAGCTAAATACTTATGTCACAGAGCTGAACTCGGATCATGTTTATGTGTGGTATGATCCATTCCACTGTGACAGCATTCTCAGATTTTATAAACCCGAGATTTGTTTTGAATTCTTTGTTACAAACGATGCGGGGGAAGTTGATGGTTCAATTGGTATTGAAGAGTGCGGGGTACGACTCGTAAGTGTTGGAGAATTGGAGAGTGTTTTATCGGAATTGGAATTGGATTCAGAAAAGAAAAAGGAGTTGAAGATTGCAGTGAAATTTGAATCAGGGTTTCCACAAGTTAAAATAGAATCAGTTGAAGATGAGAATGAGAATGAAAGCCACCTCAACATCTTATCTTCTAACAACAAAACATATACCAATGCTGGATCCAGTCACGAGGAGAATGCTACAAACCCTACTGCTTCTCAATGTAGAACACAAGTAGAAGCTACTGAAATTCAGAGCGAGTCAATCGAGATATTGCTTGATGAATTAAGGCAATTGGCATTTTCAAAGAACTTATTGAAACGTTTACCTAATGATGTGACCCTTGGAGAAGAGGTGAAAACTTTATTAGCTAAACTCAATGATAGAGGAAAAATCAGCAATGTTACTCTTCAACAACTTAATGTGGATCATAAAGATTCAATATCTAAGCTTCAAGCATCCAAAAACAAGATAATTAAGTTTGATGAGTCTATCATTGCTGGTGAGGATAAGATTATGGCAATGGATGTTGAAATTAAAGATATTAAAACACAGATTCGTTTGCTCGAGGAAAAAGCGTGTAAGGTTCAACAAGAGAAGTCGCAATTAGAGAATGCTTGCTCGAAATGTAAAGAGAAGAGAAGTGGAATTGTGGAAGAAGCTAAAAATAAAGCCTCTAAGACTATAGAAACCTGCGAGAAGATTGATAATGTCATAAAGAAGAAGCTGGAGTTGGATTCAAATTATGAGATGCTTAAAGGACATTATGCCATAATGAAACTATCGCTTCCTTTTTAG 3654 0.3818 MVFGRTGQSVGMQKKEWSHQIVIPVFYKTDPSHIRKQTGSYKNAFAKHERDLWTKEANKVRKWKAALTEAANISGWDTQTHKDEPNMIHKIVNDVLQKLRLRYPNELEGFVRNEKNCECVESLVENVQIVGIWGMGGMGKTTIAKALFAKYFAQYDHVCFARAKDYSPSKLLSELLKEEFPASDDVAISTFHMRRLASSKVLIVVDNVDSLDQFKYLCTDYGELHKDSRLIITTRDRQLLSGTVDWIYDVIEWENSKCLELFCLEAFVPSHLRENYEHLLQRAITYAGGVPLAVKVFALLLRAREIEFWESAFSKLDTHSNAAMHEVLKLSYDDLDEPQKKIFLDIAFFFIGENKDCVARILDSCAFKGSTSSEIVILKDKALITISNDHTIQMHDLLQKMGSDIICNDCGTDPATHTRLKGRAALEVIEENKGSSSIEGITLDLSQNNDFPLSADTFTKMKGLRILKFYSPSNQSCTNTYLNLPEFLEPFSKNKLRYFEWNGYPFESLPQPFYAKFLVEICMPHSNIKQLWQGIQELDKLEGIDLSECKHFVLLPDLSKASTLKWINLSGCESLVDLIHPSVLCTDTLVTLILDRCTKVRSVRGEKHLNFLEKISVDGCTNLEEFAVSSDLIENLDLSSTGIQTLDLSTGRLHKLKRLNLESLRLKHLPKELSSARSIMELKISGSKLIVNKQQLHELFDGLRSLQILHMKDVINQFELPDNVGVLSKLMELNLDGSNMKRLPESIKKLEELEILSLVNCRELECIPELPPLITLLIAINCTSLVSVSSLKNLATKMMGKTKHISFSNSLNLDKHSQNLIMESLKLTMMSAVFQNVSVRRLRVAVHSYNYSSVDACQPGKCGNGVKKGEARIKCQCNLAEEGIKASQLNTYVTELNSDHVYVWYDPFHCDSILRFYKPEICFEFFVTNDAGEVDGSIGIEECGVRLVSVGELESVLSELELDSEKKKELKIAVKFESGFPQVKIESVEDENENESHLNILSSNNKTYTNAGSSHEENATNPTASQCRTQVEATEIQSESIEILLDELRQLAFSKNLLKRLPNDVTLGEEVKTLLAKLNDRGKISNVTLQQLNVDHKDSISKLQASKNKIIKFDESIIAGEDKIMAMDVEIKDIKTQIRLLEEKACKVQQEKSQLENACSKCKEKRSGIVEEAKNKASKTIETCEKIDNVIKKKLELDSNYEMLKGHYAIMKLSLPF 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3g00002 1217 Gene3D Ribonuclease Inhibitor 631 826 IPR032675 -
Trme3g00002 1217 Gene3D Ribonuclease Inhibitor 435 630 IPR032675 -
Trme3g00002 1217 Gene3D - 254 336 IPR042197 -
Trme3g00002 1217 SMART LRR_typ_2 727 750 IPR003591 -
Trme3g00002 1217 SMART LRR_typ_2 653 676 IPR003591 -
Trme3g00002 1217 SMART LRR_typ_2 1045 1068 IPR003591 -
Trme3g00002 1217 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 626 IPR044974 GO:0006952
Trme3g00002 1217 ProSiteProfiles TIR domain profile. 1 99 IPR000157 GO:0007165
Trme3g00002 1217 Coils Coil 1031 1051 - -
Trme3g00002 1217 SUPERFAMILY "Winged helix" DNA-binding domain 325 408 IPR036390 -
Trme3g00002 1217 Gene3D - 9 98 IPR035897 -
Trme3g00002 1217 PRINTS Disease resistance protein signature 536 552 - -
Trme3g00002 1217 PRINTS Disease resistance protein signature 287 301 - -
Trme3g00002 1217 PRINTS Disease resistance protein signature 195 209 - -
Trme3g00002 1217 PRINTS Disease resistance protein signature 129 144 - -
Trme3g00002 1217 SUPERFAMILY L domain-like 443 807 - -
Trme3g00002 1217 Pfam TIR domain 13 104 IPR000157 GO:0007165
Trme3g00002 1217 MobiDBLite consensus disorder prediction 1004 1025 - -
Trme3g00002 1217 Pfam NB-ARC domain 121 332 IPR002182 GO:0043531
Trme3g00002 1217 Gene3D - 99 245 IPR027417 -
Trme3g00002 1217 Pfam Leucine Rich Repeat 517 536 IPR011713 -
Trme3g00002 1217 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 76 IPR035897 -
Trme3g00002 1217 Coils Coil 1124 1144 - -
Trme3g00002 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 346 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3g00002 Trme-Chr3 1379 7392 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3g00002 126 841 WRKY Transcription Factor Family AT5G45050 29.388 3.39e-65 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3g00002 - - cam:101515491 1281.54