Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39979g00001 ATATTCAATGAATTCAATGCTCGAAAGCCAGAAGGAATGAATGTCTTCAAGGGAGTGACTAAGAACCGTCTCTTCATGGGAATTGTTGGAATGACCTTTATACTTCAGATAATCATCATCGAGTTCCTTGGGAAGTTCACAACGACAGTGAGGCTTAATTCGATGCAGTGGCTTGCTTGTCTTTGTATTGGGCTGTTCAGCTGGCCACTTGCAATACTTGGAAAATTAATTCCAGTTCCCAAAACACCATTGTCACGATGCGTCTTGAAGGTGTTTAGGCGCTTGAAGAAATCTCGGACTGCATAA 306 0.4216 IFNEFNARKPEGMNVFKGVTKNRLFMGIVGMTFILQIIIIEFLGKFTTTVRLNSMQWLACLCIGLFSWPLAILGKLIPVPKTPLSRCVLKVFRRLKKSRTA 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39979g00001 101 Gene3D - 1 82 - -
Trme39979g00001 101 Pfam Cation transporting ATPase, C-terminus 1 77 IPR006068 -
Trme39979g00001 101 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 79 IPR023298 -
Trme39979g00001 101 PANTHER CATION TRANSPORTING ATPASE 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39979g00001 Trme-Chr39979 144 754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39979g00001 1 101 Primary Pumps ATPases AT3G21180 69.307 8.32e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39979g00001 K01537 - lja:Lj0g3v0293799.1 174.096