Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3988g00001 ATGGAACCTTTCTTCACCGTTGTTCTTTCATCCCTTCTCCTCGGTGAGATGCCAACTTTATGGGTCCTTTCTTCTCTTTTACCTATTGTTGGGGGAGTGGCACTGGCATCAATGACTGAAGTATCTTTCAATTGGATTGGATTCAGCACTGCAATGGCTTCTAACCTTACGAATCAATCACGGAATGTTTTGAGCAAAAAACTAATGGCTAATGAAGAGGACGCTTTGGACAACATCAATCTATATTCAGTTATAACCATCATTTCCTTTTTCCTGTTGTTACCGTTTGCTATATTTTTGGAGGGTGTCAAGTTTACTCCTTCATACCTGCAATCTGCGGCGAGTCAAGGATTGAATGTTAGAGAGCTATGCATAAGATCAGTTTTGGCTGCATTCTGCTTCCATGCATATCAGCAGGTTTCATATGGAATATTAGAGAAGGTATCACCTGTGACACACTCGGTCGGAAATTGCGTGAAGCGTGTGGTTGTTATCGTCTCTTCGGTTATCTTCTTCCAAACTCCT 525 0.4171 MEPFFTVVLSSLLLGEMPTLWVLSSLLPIVGGVALASMTEVSFNWIGFSTAMASNLTNQSRNVLSKKLMANEEDALDNINLYSVITIISFFLLLPFAIFLEGVKFTPSYLQSAASQGLNVRELCIRSVLAAFCFHAYQQVSYGILEKVSPVTHSVGNCVKRVVVIVSSVIFFQTP 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3988g00001 175 Pfam Triose-phosphate Transporter family 1 175 IPR004853 -
Trme3988g00001 175 SUPERFAMILY Multidrug resistance efflux transporter EmrE 2 39 - -
Trme3988g00001 175 PANTHER SOLUTE CARRIER FAMILY 35 1 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3988g00001 Trme-Chr3988 1 2151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3988g00001 1 175 Antiporters AT5G33320 69.714 5.44e-79 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3988g00001 K15283 - gmx:100819280 296.204