Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39885g00001 GCTGGTGGTACTTCTGATGATGATGATAGTGATCTTGATGAATCGGTTGATGATGTGCCGGTTGAACCTGACAATGATCCTACTTCAAGTAGGTACAGGGTGGATAATGCTAGTGAAAGCGATGACGATGATGGCCACAGGCGTGTTGTTAGGTCGGCAAAAGATAAGCGATTTGAAGAGATGGCTTCAACGGTTGACCAGATGAAGAATGCAATGAAGATCAATGATTGGGTGAGTTTGCAAGAGAGTTTTGATAAGATCAACAAACAACTCGAGAAAGTGATGCGTGTTGCTGAGACTGATAAGGTCCCTAATCTTTATATTAAGGCTCTTGTCTTGTTGGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGAGGCCAAGAAGAAGATGAGCACTAGCAATGCCAAAGCCTTGAACTCGATGAAGCAGAAATTGAAGAAGAATAATAAGCAATAYGAGGAGTTGATTACTAAATGCAGGGAGAGTCCTGAGAGCGAGGAGGAAAAGGWYGATGATGAGGAGAGCGATGAAGAAGATGATAGTGATGGTGAGACTATTGAGCCCGAGCAGCTTGGGAATCGGGAACCTAGATCGGATTCAGAAGCTGAATACGAAGAGGGAAGGGATGATGCTGGTGATGGACCTTGGGACCAACAGCTTAGCAGGAGAGATAGACTTTTGGATAGACAGCTCATGAAAGACCCTAGGGAGGTCACATGGGATATTGTTAACAAGAAGTTTAAAGAGATTGTGGCAGCTAGGGGAAGGAGGGGAACTGGAAGGTTTGAACAGGTCTCAGTGGCCATATGCCCATAA 819 0.4469 AGGTSDDDDSDLDESVDDVPVEPDNDPTSSRYRVDNASESDDDDGHRRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVAETDKVPNLYIKALVLLEDFLAQALANKEAKKKMSTSNAKALNSMKQKLKKNNKQYEELITKCRESPESEEEKXDDEESDEEDDSDGETIEPEQLGNREPRSDSEAEYEEGRDDAGDGPWDQQLSRRDRLLDRQLMKDPREVTWDIVNKKFKEIVAARGRRGTGRFEQVSVAICP 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39885g00001 272 MobiDBLite consensus disorder prediction 1 21 - -
Trme39885g00001 272 MobiDBLite consensus disorder prediction 133 235 - -
Trme39885g00001 272 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 7 267 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trme39885g00001 272 MobiDBLite consensus disorder prediction 35 54 - -
Trme39885g00001 272 MobiDBLite consensus disorder prediction 1 54 - -
Trme39885g00001 272 Coils Coil 136 163 - -
Trme39885g00001 272 MobiDBLite consensus disorder prediction 188 235 - -
Trme39885g00001 272 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 33 267 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trme39885g00001 272 MobiDBLite consensus disorder prediction 147 166 - -
Trme39885g00001 272 MobiDBLite consensus disorder prediction 167 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39885g00001 Trme-Chr39885 125 1043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39885g00001 3 266 Eukaryotic Initiation Factors Gene Family AT3G56150 56.364 3.91e-78 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39885g00001 K03252 - gmx:100779751 352.829