Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39845g00001 ATGAAATTCAGGCCTAAATCATTTGGTGATTTGGTGGGACAAGATGTGGTAGTTAGGTCTCTTTTGAATGCAATCTCTAGTGGAAGGATAACATCATTTTATCTCTTCCATGGTCCACGCGGTACCGGTAAGACATCTGCTTCTAGAATATTTGCTTCTGCTCTGAACTGCCTCTCTGTTGAGGAGCAAAGACCATGTGGCTTGTGTAGAGAATGTGTTTTATATTTTTCTGGAAGAAGTAAAGATGTTAAGGTGGTGGATTCTGTGAGAATCAATCATACAGACCAGGTTAAATCCCTCGTCAAGAATGCGTGTACACCTCCAGTTTCCTCGCGTTTTAAGGTTTTCATTATTGATGAGTGCCAATTATTGAACGAGGAGAYGTGGGCGTGCCTTTCGAATAACCTAGAGAACATTTCTCAACATGCGGTGTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCAAAGTGCAGTTTCCCGGGCACAGAGGTATTACTTTCCGAAGGTTCAAGACGCTGATATTTTATGCAGATTAGAAACAATTTGTGCAGAAGAAGGTCTTGATTATGAACAAGATGCTTTGGACCTTATTGCCGTAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATTATGCTTGATCAGCTGAGTTTGCTCGGTAAAAAGATCAAAATTTCCTTTGTTTACGAGCTTACTGGGATTGTTTCCGATGCTGAATTGCTTGATTTGCTGGATCTGGCGATGTCCCCAGACACTACAAATACAGTTATAAGAGCTCGTGAGCTGATGAGGTCGAGGATAGATCCTTTGCAACTTGTGTCACAGTTGGCAAATCTCATAATGGACATCCTTGCGGGGAAATGTGATTATGAAGCCAGAAGTAGACTTTTTAGTAGATATACTT 907 0.4123 MKFRPKSFGDLVGQDVVVRSLLNAISSGRITSFYLFHGPRGTGKTSASRIFASALNCLSVEEQRPCGLCRECVLYFSGRSKDVKVVDSVRINHTDQVKSLVKNACTPPVSSRFKVFIIDECQLLNEEXWACLSNNLENISQHAVFVMITPDLDKLPQSAVSRAQRYYFPKVQDADILCRLETICAEEGLDYEQDALDLIAVKSCGSVRDAEIMLDQLSLLGKKIKISFVYELTGIVSDAELLDLLDLAMSPDTTNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCDYEARSRLFSRYT 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39845g00001 302 CDD HLD_clamp_pol_III_gamma_tau 173 234 IPR045085 -
Trme39845g00001 302 Pfam DNA polymerase III, delta subunit 14 171 - -
Trme39845g00001 302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 222 IPR027417 -
Trme39845g00001 302 Gene3D - 172 234 - -
Trme39845g00001 302 Gene3D - 1 169 IPR027417 -
Trme39845g00001 302 FunFam DNA polymerase III subunit gamma/tau 172 234 - -
Trme39845g00001 302 NCBIfam DNA polymerase III subunit gamma/tau 2 288 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Trme39845g00001 302 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 1 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39845g00001 Trme-Chr39845 27 1028 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39845g00001 2 236 Core DNA Replication Machinery Family AT1G21690 27.615 1.19e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39845g00001 - - tpra:123897029 560.066