Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39820g00001 GATTTTAAAATGTCAGGTGATGCACAAAAGCCTCATACAGCCATATCACTGCAGTCATCACTCCCTGATACCCCGCCTCGTTTCGAGCTAGGATTTAATCAACCTATGATCTGTACAAAATATCCTTATGCAGATCAATTTTATGGACTCATCTCAACTTATGGACCACAAATTCCGGGGCGTGTAATGCTGCCACTTAACATGACATCTGATGATGGACCGATTTATGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCTCGCGCCAAAGCTGTACTTGGCCAGAAATTGATTAAACGTCGCAAGTCGAATAGAATACATTTACTCGAGAAACAAGGCTTTATGGTGCTTTTTTTCTTCGCTTACAAAACTCGAACTTGA 393 0.4148 DFKMSGDAQKPHTAISLQSSLPDTPPRFELGFNQPMICTKYPYADQFYGLISTYGPQIPGRVMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLGQKLIKRRKSNRIHLLEKQGFMVLFFFAYKTRT 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39820g00001 130 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 106 IPR001289 GO:0003700|GO:0006355
Trme39820g00001 130 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 74 107 IPR001289 GO:0003700|GO:0006355
Trme39820g00001 130 MobiDBLite consensus disorder prediction 1 22 - -
Trme39820g00001 130 Gene3D - 71 119 - -
Trme39820g00001 130 ProSiteProfiles NF-YA/HAP2 family profile. 71 106 IPR001289 GO:0003700|GO:0006355
Trme39820g00001 130 SMART cbf3 70 121 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39820g00001 Trme-Chr39820 292 1006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39820g00001 10 105 CCAAT-HAP2 Transcription Factor Family AT3G05690 61.000 2.28e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trme39820g00001 CBFB_NFYA 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39820g00001 K08064 - gmx:100794755 169.088