Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme398178g00001 ATGATAGCAAAAATTGACGTATATATTTCTGCTGAGAATAAAGTAAAAGGAGAAGCAGATTGGTATGGTATACTTGGTGTGGACCCGCGTGCCGACGATGATACGGTTCGGAAACATTATAGGAAGCTAGCTCTCATGCTTCACCCAGACAAGAACAAGTCTGTCGGAGCCGATGGGGC 179 0.4525 MIAKIDVYISAENKVKGEADWYGILGVDPRADDDTVRKHYRKLALMLHPDKNKSVGADGA 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme398178g00001 60 SUPERFAMILY Chaperone J-domain 12 56 IPR036869 -
Trme398178g00001 60 SMART dnaj_3 19 60 IPR001623 -
Trme398178g00001 60 Pfam DnaJ domain 20 53 IPR001623 -
Trme398178g00001 60 CDD DnaJ 20 54 IPR001623 -
Trme398178g00001 60 PANTHER BNAC03G44070D PROTEIN 1 60 - -
Trme398178g00001 60 PRINTS DnaJ domain signature 40 55 IPR001623 -
Trme398178g00001 60 PRINTS DnaJ domain signature 22 40 IPR001623 -
Trme398178g00001 60 ProSiteProfiles dnaJ domain profile. 20 60 IPR001623 -
Trme398178g00001 60 Gene3D DnaJ domain 6 60 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme398178g00001 Trme-Chr398178 1 179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme398178g00001 1 60 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 42.424 3.88e-13 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme398178g00001 - - tpra:123911521 116.701