Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39815g00001 TCATGTCATTTATGTCCCTTGTCACATTTGTCCTTCAGGGGTTATGATCTTCAAGATGAGGAGGACCGGGCTATAGTTGCTGCTCATGCAATCCATGGAAACAAATGGGCAGCCATTGCCAGGCTTCTACCAGGAAGAACAGATAATGCCATTAAGAACCACTGGAACTCTACTTTGAGGCGTCGGGGAATTGACCAGATTAGGTTAGAATCTGGTATCATGGTAGAAGCGAAAGCATCATCAGAAGAAACTCTATCATGTGGAGATGTTAATTCTTTGAAATCCTCAGAAGGAAGAGATGTTAGCTCTATGGAGATTGTGGCCGATAAATATGAAGGCAATGCAAGGACTGATGCTCAACTATACCATGAAGTCAGGGATCCTCCGACCCTTTTTAAGCCTGTAGCACGTGTAAGTGCTTTTAACGTGTACAACACTTTCAATGGTTCACAGCCTTCAACATCAGTTCCAAGACCTGTTCCAATGCAAGGACCTATTTTACATCCGCCAAAATCAGATGCGGAAATTTGTAAAATGCTCAACA 544 0.4301 SCHLCPLSHLSFRGYDLQDEEDRAIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGIDQIRLESGIMVEAKASSEETLSCGDVNSLKSSEGRDVSSMEIVADKYEGNARTDAQLYHEVRDPPTLFKPVARVSAFNVYNTFNGSQPSTSVPRPVPMQGPILHPPKSDAEICKMLN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39815g00001 181 SUPERFAMILY Homeodomain-like 19 61 IPR009057 -
Trme39815g00001 181 Pfam Myb-like DNA-binding domain 19 58 IPR001005 -
Trme39815g00001 181 ProSiteProfiles Myb-like domain profile. 19 59 IPR001005 -
Trme39815g00001 181 Gene3D - 18 62 - -
Trme39815g00001 181 SMART sant 13 61 IPR001005 -
Trme39815g00001 181 CDD SANT 19 59 IPR001005 -
Trme39815g00001 181 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 63 IPR017930 -
Trme39815g00001 181 PANTHER MYB PROTEIN-RELATED 16 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39815g00001 Trme-Chr39815 392 1051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39815g00001 21 180 MYB Transcription Factor Family AT3G09230 44.068 8.46e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme39815g00001 Myb_DNA-binding 8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39815g00001 K09422 - gmx:100813406 241.506