Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39803g00001 ATGATTCTATCTCTTACTTTGGGTGTTGTTTCATTGATTTGTTTGGTCTTTACAGTGTCCATTTTCTTCACTTACAGGCGTCAAGTTAATAGGTATGCAATGTTGTCTGAAAGTGAAAAACTTGAATTTACTCAAGAATGCTCCTTGAGGTCATTTTCTTTTGACGAACTTGCAAAGTCAACCGGGGGATTTTCAGAAGAGATAGGGAGGGGGTCATTTGGAGCTGTTTATAAAGGTAAAATAGGCCACAATAACAGAAGCGTTGCTGTGAAGAGACTGGAGGAGAGAATTTCTGATGAAGGGGAGAGGGAATTCCAAGCTGAAATTACTGCCATTGCTCAAACTCATCACAGGAATTTGGTTAAGCTTATTGGTTTTTGTATAGAAGGTTCCAAGAAGCTTCTTGTTTATGAATTTATCAGCGAAGGGTCTCTTGCAAATCTCCTCTTTAAAGGGGAAATGAGATTATCTTGGGAAGAGAGAATGAAACTTGCATTGGACGTAGCTAGAGGACTACTGTATCTACACGAAGAGTGTGAAGTCCGAATCATCCATTGCAATATAAACCCTCGAAATATACTTCTGGATGAAGCGTGGACTGCAAAAATATCTGATTTTGGATTAGCAAGACTATCAAAGAGGGGCCACTCAAGAACTAAAATAGAGTATGGTGGCACAAGCAGCTACTTGGCACCTGAATGGCAGAAGGAGGATGCATCAGTATCAGTAAAATCTGACATTTACAGTTTCGGTGTG 756 0.3995 MILSLTLGVVSLICLVFTVSIFFTYRRQVNRYAMLSESEKLEFTQECSLRSFSFDELAKSTGGFSEEIGRGSFGAVYKGKIGHNNRSVAVKRLEERISDEGEREFQAEITAIAQTHHRNLVKLIGFCIEGSKKLLVYEFISEGSLANLLFKGEMRLSWEERMKLALDVARGLLYLHEECEVRIIHCNINPRNILLDEAWTAKISDFGLARLSKRGHSRTKIEYGGTSSYLAPEWQKEDASVSVKSDIYSFGV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39803g00001 252 Gene3D Phosphorylase Kinase; domain 1 34 139 - -
Trme39803g00001 252 FunFam Os07g0541700 protein 140 224 - -
Trme39803g00001 252 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Trme39803g00001 252 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 252 - -
Trme39803g00001 252 ProSiteProfiles Protein kinase domain profile. 62 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme39803g00001 252 FunFam S-receptor-like serine/threonine-protein kinase 31 139 - -
Trme39803g00001 252 SUPERFAMILY Protein kinase-like (PK-like) 43 252 IPR011009 -
Trme39803g00001 252 Gene3D Transferase(Phosphotransferase) domain 1 140 252 - -
Trme39803g00001 252 Pfam Protein tyrosine and serine/threonine kinase 64 252 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39803g00001 Trme-Chr39803 100 855 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39803g00001 2 252 Receptor kinase-like Gene Family AT2G23950 41.923 3.37e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme39803g00001 PK_Tyr_Ser-Thr 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39803g00001 - - cam:101496142 438.343