Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39781g00001 ACGACGTGTTGCTTAGCAAGACACGCTCTAAGCTTGCTTCGTGAAAGGAAAGACGGATACGATATAGTGATCAGCGATGTAAACATGCCCGACATGGACGGTTTCAAACTTCTTGAGCACGTTGGACTTGAAATGGATCTTCCTGTCATTATGATGTCTGTGGATGGAGAAACAAGCAGGGTGATGAAAGGCGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAGCTGCGAAATATATGGCAACATGTATTCAGAAAAAGGATACATGAGGTTAGAGACTTTGAAAATTTCGAGAGTTTTGAGAGCATGCACTTGATGATAAATGGATCAGAACTGTCTGACGAGGGGAACCTGTTTGCTTTAGAAGATATGACCTCAACGAAGAAAAGAAAAGACTTAGATAACAAACACGACGACAAAGAATTTCTGGATTCATCTTCCTCAAAGAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGTTTTGATAGTAAGTTTCTTGTCCAGGTTCTCTAA 564 0.4007 TTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVRDFENFESFESMHLMINGSELSDEGNLFALEDMTSTKKRKDLDNKHDDKEFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDSKFLVQVL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39781g00001 187 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 176 IPR045279 GO:0009736
Trme39781g00001 187 Gene3D - 157 184 - -
Trme39781g00001 187 SUPERFAMILY CheY-like 7 98 IPR011006 -
Trme39781g00001 187 SMART REC_2 2 86 IPR001789 GO:0000160
Trme39781g00001 187 Pfam Response regulator receiver domain 6 85 IPR001789 GO:0000160
Trme39781g00001 187 Gene3D - 1 156 - -
Trme39781g00001 187 ProSiteProfiles Response regulatory domain profile. 1 90 IPR001789 GO:0000160
Trme39781g00001 187 CDD REC_typeB_ARR-like 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39781g00001 Trme-Chr39781 298 965 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39781g00001 1 187 Response Regulator Gene Family AT4G16110 53.731 1.97e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme39781g00001 Response_reg 1.3e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39781g00001 K14491 - gmx:100797421 340.502