Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39779g00001 ATGCTATCTTCTGGATCAGCATGCATGACAGGCAACCCGATTGACGATTGTTGGAAATGCGACCCAGAATGGCCAAACAATCGACAACGATTAGCAGATTGTGCAATAGGGTTTGGTCAGTATGCAAAAGGAGGAAAAGGTGGTGAATATTATGTTGTAACAGATTCCTCAGATGATGATCCTGTTACCCCAAAACCTGGTACATTAAGATATGCTGTGATAAAAAATGAACCATTGTGGATAGTGTTTCCTAGTAACATGTTGATTAAGCTAAAGCAAGAATTGATTTTTAATAGTTATAAGACTATTGATGGTCGTGGTGCTGATGTTCATATTGTTGGAGGAGGGTGCATTACTTTGCAGTTTATAA 370 0.3865 MLSSGSACMTGNPIDDCWKCDPEWPNNRQRLADCAIGFGQYAKGGKGGEYYVVTDSSDDDPVTPKPGTLRYAVIKNEPLWIVFPSNMLIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFI 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39779g00001 123 PANTHER PECTATE LYASE 18-RELATED 7 122 IPR045032 GO:0030570
Trme39779g00001 123 SUPERFAMILY Pectin lyase-like 12 120 IPR011050 -
Trme39779g00001 123 PRINTS Pollen allergen Amb family signature 94 110 IPR018082 -
Trme39779g00001 123 PRINTS Pollen allergen Amb family signature 34 51 IPR018082 -
Trme39779g00001 123 PRINTS Pollen allergen Amb family signature 58 83 IPR018082 -
Trme39779g00001 123 Gene3D - 11 122 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39779g00001 Trme-Chr39779 53 422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39779g00001 8 123 Polysaccharide Lyase AT3G53190 84.483 7.35e-72 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39779g00001 K01728 - gmx:100775595 229.95