Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme397799g00001 | GCTGTGAAAACAATGAAGAAGGGAGAGAAAGTTCTCTTGAATGTTAAGCCAGAATATGCATTTGGTGAGAGTGGAAAACCTTCATCAGGAAATGATGGTGCTGTACCGCCAAATGCTTCGCTCCAAATCGATCTTGAGTTAGTCTCGTGGAAGACTGTATCTGACATTACTAAGGATAGGAAGGTCCTTAAGAAGATCTTGAAAGAAGGA | 210 | 0.4143 | AVKTMKKGEKVLLNVKPEYAFGESGKPSSGNDGAVPPNASLQIDLELVSWKTVSDITKDRKVLKKILKEG | 70 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme397799g00001 | 70 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 1 | 51 | IPR001179 | GO:0003755 | |
| Trme397799g00001 | 70 | Gene3D | - | 1 | 51 | IPR046357 | GO:0003755 | |
| Trme397799g00001 | 70 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 1 | 48 | IPR001179 | GO:0003755 | |
| Trme397799g00001 | 70 | SUPERFAMILY | FKBP-like | 1 | 66 | - | - | |
| Trme397799g00001 | 70 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 54 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme397799g00001 | Trme-Chr397799 | 1 | 307 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme397799g00001 | 1 | 70 | Calmodulin-binding Proteins | AT3G25230 | 75.714 | 1.77e-31 | 112 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme397799g00001 | K09571 | - | gmx:100819747 | 129.413 |