Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme397725g00001 GCTGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACCGGAATGGTGAAGGCGGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCAAGTATTGTTGGCCGACCACGTCATACCGGTGTTATGGTTGGGATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCCCAATCAAAAAGAGGTATTCTTACTCTCAAGTAC 210 0.481 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKY 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme397725g00001 70 Gene3D - 2 70 - -
Trme397725g00001 70 PRINTS Actin signature 50 61 IPR004000 -
Trme397725g00001 70 PRINTS Actin signature 27 36 IPR004000 -
Trme397725g00001 70 PRINTS Actin signature 62 70 IPR004000 -
Trme397725g00001 70 ProSitePatterns Actins signature 1. 54 64 IPR004001 -
Trme397725g00001 70 FunFam Actin, alpha skeletal muscle 2 70 - -
Trme397725g00001 70 SUPERFAMILY Actin-like ATPase domain 4 70 IPR043129 -
Trme397725g00001 70 Pfam Actin 4 69 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme397725g00001 Trme-Chr397725 1 307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme397725g00001 1 70 Cytoskeleton Gene Families AT3G12110 98.571 5.28e-45 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme397725g00001 K10355 - psom:113310878 145.591