Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39770g00001 GTGTTGGTTGCACACCTCCAGGAGCACCGTTCAGCAGTTAGTGATATAGCAGTTTCTTCTGACAACAGCTTTTTTGTGAGTGCATCAGATGACTCTACAGTCAAGATTTGGGATTCCAGAAAGCTAGAAAAAGACATTTCATTCAGGTCAAAGCTAACTTATCACCTGGAGGGAAGCCATGCGTTATGTGTAGCAATGCTTCCAGGTTCAGCTCAAGTAATAGTTGGAGCATCTGATGGATTTATTCATACGTTTTCTGTTGATCATATCTCTAGAGGTCTAGGAAATGTTGTTGAGAAGTATTCTGGTATTGCTGATATCACAAAGAAGGACACCAAAGAAGGTGCCATACTTGGCCTATTAAATAGCCCTGTGGATAATAATAGCATTATGTATAGCACCCAGAACTGTGGCATCCATCTATGGGATACGAGGTCAAATTCCAATTCTTGGACACTGAAAGCTACTCCCGAGGAGGGCTACGCCTTGTCCCTAGCATCAGGGCCTTGTTCCAACTGGTTTGTATCAGGGTCTTCCAGGGGTGTAATTACACTTTGGGATCTGAGATTTCTTGTACCTGTAAACTCTTGGAAGTATTCTATTGCATGTCCTATAGAAAAAATTTGTCTCTTCCTTCCTCCTCCAAATGCTTCTCTGTCTTCAACCACTAGGCCCCTTGTTTATGTGGCTGCGGGTTGCAATGAAGTTTCTCTTTGGAATGCAGAGAATGCTAGCTGCCACCAGGTATGGGGTATTTGCAATTGTTTATAG 771 0.4293 VLVAHLQEHRSAVSDIAVSSDNSFFVSASDDSTVKIWDSRKLEKDISFRSKLTYHLEGSHALCVAMLPGSAQVIVGASDGFIHTFSVDHISRGLGNVVEKYSGIADITKKDTKEGAILGLLNSPVDNNSIMYSTQNCGIHLWDTRSNSNSWTLKATPEEGYALSLASGPCSNWFVSGSSRGVITLWDLRFLVPVNSWKYSIACPIEKICLFLPPPNASLSSTTRPLVYVAAGCNEVSLWNAENASCHQVWGICNCL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39770g00001 256 Gene3D - 95 255 IPR015943 GO:0005515
Trme39770g00001 256 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 38 IPR001680 GO:0005515
Trme39770g00001 256 SUPERFAMILY WD40 repeat-like 3 248 IPR036322 GO:0005515
Trme39770g00001 256 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 6 38 - -
Trme39770g00001 256 SMART WD40_4 146 187 IPR001680 GO:0005515
Trme39770g00001 256 SMART WD40_4 49 86 IPR001680 GO:0005515
Trme39770g00001 256 SMART WD40_4 1 38 IPR001680 GO:0005515
Trme39770g00001 256 Gene3D - 1 91 IPR015943 GO:0005515
Trme39770g00001 256 PANTHER PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 1 250 IPR045162 GO:0004674|GO:0016236|GO:0045324
Trme39770g00001 256 Pfam WD domain, G-beta repeat 3 38 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39770g00001 Trme-Chr39770 1 771 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39770g00001 18 210 Eukaryotic Initiation Factors Gene Family AT2G46290 22.335 1.93e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39770g00001 K08333 - gmx:100818467 461.84