Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3972g00001 ATGGAATATAATCAAATATATGGAGTGATACCCGAAAGAATTGGACAACTTATCGGTTTAACTTCCTTAAACATTGGTAACAATTTCCTTGAGGGAACAATTCCAGATTCAATTGGAAAGCTTAATAATCTTGTAGTTTTGAACTTGCAAAAAAACAAATTATCTGGTAATATTCCTACAAGTATTGGCAATTTGACTACCTTGTCTAAACTATTTCTGACCGACAATGAATTGCAAGGAAGCATTCCATTCACCCTTAGATATTGTACCAACTTATTAGAATTGAGTATAGCTGATAACAAATTGAGTGGCGATATACCCAATCAAACATTTAGCTATCTCGAGAGTTTAATATTCATTTTCTTGGAAGACAACTCCTTGACCGGTCCCATTCCTTCAGAGTTTGGTAATTTGAAGCATCTTGCAGTATTATATCTAGACTCCAATAAGTTTTCTGGTGAAATTCCTAAAGATCTTGCTTCTTGCTTAACATTGACAGAACTTCGGTTGGCAAGAAACTTCTTACATGGAAGTATACCTTTGTTCTTGGGCTCTTTCAGATCCTTGGAAGTCTTAGACATTTCTAACAACAATTTCTCCAGCACAATCCCCTTTGAACTAGAAAATCTAACATTTTTGAGTACTCTAAACTTGTCTTTTAACAATTTATATGGCGAGGTTCCCAAAGGAGGTGTCTTTRGCAATGTCACAACAATTTCAGTAACTGGAAATAAGAACCTTTGTGGAGGGATACCTCAATTAAAGCTTCCTGCCAAAAGGTTACCTTATTCACCATCTTTGCAAAATGGAAACTTGAGGGTTACTTATGGTGAACTACATGAAGCAACCAATGGTTTTTCTTCATCTAACTTGATAGGAGCAGGAAGCTTTGGATCTGTTTACAAAGGATCACTTCTCCACTTTGAAAGACCTATTGTTGTAAAGGCTATTGTGTTTGAGTTCATGCCGAATGGAAGTCTAGAAAATTTGTTGCATGATATTGAAGGGTCTGAAAATCATAATCTCAGCTTCACAAAAAGGGTTGACATTGCTCTTGATGTAGCTCATGCACTTGATTATCTACACAATGATACAGAGCAAGCCATAGTTCACTGTGATATTAAGCCAAGCAATGTTCTTCTTGATGA 1148 0.3589 MEYNQIYGVIPERIGQLIGLTSLNIGNNFLEGTIPDSIGKLNNLVVLNLQKNKLSGNIPTSIGNLTTLSKLFLTDNELQGSIPFTLRYCTNLLELSIADNKLSGDIPNQTFSYLESLIFIFLEDNSLTGPIPSEFGNLKHLAVLYLDSNKFSGEIPKDLASCLTLTELRLARNFLHGSIPLFLGSFRSLEVLDISNNNFSSTIPFELENLTFLSTLNLSFNNLYGEVPKGGVFXNVTTISVTGNKNLCGGIPQLKLPAKRLPYSPSLQNGNLRVTYGELHEATNGFSSSNLIGAGSFGSVYKGSLLHFERPIVVKAIVFEFMPNGSLENLLHDIEGSENHNLSFTKRVDIALDVAHALDYLHNDTEQAIVHCDIKPSNVLLD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3972g00001 382 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 132 256 - -
Trme3972g00001 382 PANTHER OS04G0122200 PROTEIN 4 382 - -
Trme3972g00001 382 Gene3D Phosphorylase Kinase; domain 1 265 326 - -
Trme3972g00001 382 ProSiteProfiles Leucine-rich repeat profile. 188 211 IPR001611 GO:0005515
Trme3972g00001 382 ProSitePatterns Protein kinases ATP-binding region signature. 292 315 IPR017441 GO:0005524
Trme3972g00001 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Trme3972g00001 382 Pfam Leucine rich repeat 19 78 IPR001611 GO:0005515
Trme3972g00001 382 Pfam Leucine rich repeat 91 151 IPR001611 GO:0005515
Trme3972g00001 382 Pfam Protein kinase domain 317 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3972g00001 382 ProSiteProfiles Protein kinase domain profile. 218 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3972g00001 382 SUPERFAMILY L domain-like 2 249 - -
Trme3972g00001 382 Pfam Leucine Rich Repeat 188 210 IPR001611 GO:0005515
Trme3972g00001 382 SUPERFAMILY Protein kinase-like (PK-like) 269 382 IPR011009 -
Trme3972g00001 382 FunFam MDIS1-interacting receptor like kinase 2 isoform A 8 110 - -
Trme3972g00001 382 Gene3D Ribonuclease Inhibitor 1 260 IPR032675 -
Trme3972g00001 382 Gene3D Transferase(Phosphotransferase) domain 1 327 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3972g00001 Trme-Chr3972 1 1415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3972g00001 1 382 Receptor kinase-like Gene Family AT3G47090 37.137 3.13e-82 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trme3972g00001 Pkinase 3.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3972g00001 - - mtr:25482466 496.893