Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39639g00001 ATGGGATTATCCTTTATTTATGGGTGTCACAGTTACCTCAATTTGCAGGGCATACTACTCAAAGGTGGACATGTTCTGGATGCGCTAGCTTCATGCCATACCATTGCATTTGATAAAACAGGGACATTGACTACTGGTGGACTTTTATTCAAGGCAATTGAGCCCATTTATGGTCATGACATCAGAAATAGGGAATCAATCATTTCTTCCTGCTGCATTCCTACATGTGAAAAGGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGCACTACCCACCCCATTGGAAGGGCTGTGGTTGACCATAGTGAAGGGAAAGACCTCCCTTCTGTTTCTGTTGAAAATTTTGAATACTTTCCTGGTAGAGGCCTTACTGCTACTGTTAACAGCATTGAG 396 0.4318 MGLSFIYGCHSYLNLQGILLKGGHVLDALASCHTIAFDKTGTLTTGGLLFKAIEPIYGHDIRNRESIISSCCIPTCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSVSVENFEYFPGRGLTATVNSIE 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39639g00001 132 ProSitePatterns E1-E2 ATPases phosphorylation site. 38 44 IPR018303 -
Trme39639g00001 132 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 16 132 - -
Trme39639g00001 132 Gene3D - 65 132 IPR023299 GO:0000166
Trme39639g00001 132 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 38 124 IPR023299 GO:0000166
Trme39639g00001 132 Pfam haloacid dehalogenase-like hydrolase 34 125 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39639g00001 16 132 Primary Pumps ATPases AT4G37270 81.197 3.58e-52 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39639g00001 K01534 - gmx:100776309 210.69