Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3961g00001 ATGTCTTCATTGGATTTTATACTCATGGAACCAGCCGAAGCTGCAGGGGTTAGTAGTGGAAAGTGGACGGATCAGGAGACACTTCTGCTCCTTGAAGCATTAGAGCTTTATAAAGAAAATTGGAATGAAATTGCAGAGCATGTTGGAACAAAATCYAAAGCTCAGTGCATATTGCACTTTGTTCAAATGCCAATTATGGATGCCTTTGTGGACTGTGATGATGATGTTGATGCTGGTTCCAAAGAAACTGCAGATCCAGCTGCAACAAACAACAATTTGTCTATAGATGAAGACAAAGATAAAAAAGATGAAGACAAAGATAAAAAAGATGCAGGCAAAGATAAAAAAGATGAAGACAAAGATAAAAAAGATAAAGATNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGAAACTTCTCAGGCTGAAGATGTTAAAGTGAAAGATAATCAAGAGGAAACTCCAAAGTTACCTGATGGTAGTGACGAGAAAACTAGTGAGGAAACTTCTAAATTAGAAGATGATATTAAAGCAAAATTGGGTGAGGAAGTAAGTAATGAATGTGTTTTAAATGCTCTTAAGGAAGCATTTGCAGCTGTTGGTTATTCTCCTGAACCTGAAGGCCCGTCTTCATTTGCTGAAGTGGGTAATCCTGTCATGGCATTGGCAGCTTTCCTTTCACAGTTGGTGGGTTCTGATGTGGCTGTTGCTTCAGCTCATAACTACATAAAATCCTTGTCTGGAAATACTCCTGGCACTGAGATTGCTTCAAGGTGTTGCTTTCTTCTAGAAGATCCACCAGATGATAAGAAGGAAACAACTACTTCTGAGAGGGATTTTAAAAGAGTGGGAGATCAGACTGACAAGAGTGTACAACAGGATACAGCGATGTTAGATGATAAAGATTTAGAAAACGATCCCCAGAAAACAAAAATTGCCGGTGATGCTTCAGAAGACAAGTTACATCTGGCTTCTACAGATGGTGGAATCTCAGAAAAATCA 1026 0.3655 MSSLDFILMEPAEAAGVSSGKWTDQETLLLLEALELYKENWNEIAEHVGTKSKAQCILHFVQMPIMDAFVDCDDDVDAGSKETADPAATNNNLSIDEDKDKKDEDKDKKDAGKDKKDEDKDKKDKDXXXXXXXXXXXXXXXXXXXETSQAEDVKVKDNQEETPKLPDGSDEKTSEETSKLEDDIKAKLGEEVSNECVLNALKEAFAAVGYSPEPEGPSSFAEVGNPVMALAAFLSQLVGSDVAVASAHNYIKSLSGNTPGTEIASRCCFLLEDPPDDKKETTTSERDFKRVGDQTDKSVQQDTAMLDDKDLENDPQKTKIAGDASEDKLHLASTDGGISEKS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3961g00001 342 MobiDBLite consensus disorder prediction 94 128 - -
Trme3961g00001 342 MobiDBLite consensus disorder prediction 150 186 - -
Trme3961g00001 342 Pfam Myb-like DNA-binding domain 20 62 IPR001005 -
Trme3961g00001 342 SUPERFAMILY Homeodomain-like 17 66 IPR009057 -
Trme3961g00001 342 MobiDBLite consensus disorder prediction 272 334 - -
Trme3961g00001 342 Coils Coil 125 126 - -
Trme3961g00001 342 ProSiteProfiles SANT domain profile. 17 68 IPR017884 -
Trme3961g00001 342 PANTHER SWI/SNF COMPLEX-RELATED 18 300 - -
Trme3961g00001 342 MobiDBLite consensus disorder prediction 272 342 - -
Trme3961g00001 342 CDD SANT 38 63 IPR001005 -
Trme3961g00001 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 56 IPR017930 -
Trme3961g00001 342 Gene3D - 17 68 - -
Trme3961g00001 342 FunFam SWI/SNF complex subunit SMARCC2 isoform C 18 68 - -
Trme3961g00001 342 Coils Coil 146 151 - -
Trme3961g00001 342 ProSiteProfiles Myb-like domain profile. 14 64 IPR001005 -
Trme3961g00001 342 SMART sant 18 66 IPR001005 -
Trme3961g00001 342 MobiDBLite consensus disorder prediction 73 186 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3961g00001 22 60 EF-hand Containing Proteins AT3G07740 50.000 1.77e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme3961g00001 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3961g00001 K11649 - gmx:100786881 390.193