Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme396082g00001 ATGGGTCGTCGCAAAATTGAGATTGAGTCTGTGAGAGACCCCAACACGAGGCAAGTTACATTCTCAAAGCGTCGATCAGGCTTATTCAAAAAGGCAAATGAATTGTCTATTTTGTGTGGAGCAGAAGTTGCTATTGTCGT 140 0.4286 MGRRKIEIESVRDPNTRQVTFSKRRSGLFKKANELSILCGAEVAIVV 47
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme396082g00001 47 SMART madsneu2 1 47 IPR002100 GO:0003677|GO:0046983
Trme396082g00001 47 PRINTS MADS domain signature 38 47 IPR002100 GO:0003677|GO:0046983
Trme396082g00001 47 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trme396082g00001 47 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trme396082g00001 47 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trme396082g00001 47 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 47 IPR002100 GO:0003677|GO:0046983
Trme396082g00001 47 PANTHER MADS BOX PROTEIN 3 47 - -
Trme396082g00001 47 Gene3D - 14 47 IPR036879 GO:0003677|GO:0046983
Trme396082g00001 47 CDD MADS 2 47 - -
Trme396082g00001 47 SUPERFAMILY SRF-like 1 47 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme396082g00001 Trme-Chr396082 1 140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme396082g00001 1 47 Type I MADS-box Gene Family AT2G34440 74.468 1.37e-19 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme396082g00001 SRF-TF 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme396082g00001 - - mtr:11439559 86.6557