Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39584g00001 ATGGATCTTCTTAGATCATGTGGAGTTGATCGAGTGTATAAAATACAAGAAATGAACGAAAGTGAATCCCTTGAGCTTTTCAGTTGGCACGCATTCAAGCAACCAAGTCCGACAAAAGCTTTTGCTACACATTCAACAGATGTGGTTGCTTATTCTGGGAGATTGCCACTAGCACTGGAAGAACTTGGCTCCTATTTGTATAAATGTGAAATACAAGAGTGGCGGAGAGTTTTGGAGGAACTCAAACGTACTCCCAATGATGAAGTATATAAGAAGCTTAAAGTAAGCTTCGATGGTTTAAAACATGTTATAGAGAAACAAATATTCCTTGATATAGTCTGTTTCTTTATTGGTATGGACAAAAATGACGTACTCCAAACATTAAATAGATCAACACAACTCCCAACTCTTGTAATACGTATCCTTGAAGAAAAGAGCCTTGTAACCGTTGATGAGAATAACAAGATTCAAATGCATGTTTTGCTACAAGCCATGGCAAGAGAAATCATTAAGAGGGAATCAAGTTATATGTCTGATCAG 540 0.3704 MDLLRSCGVDRVYKIQEMNESESLELFSWHAFKQPSPTKAFATHSTDVVAYSGRLPLALEELGSYLYKCEIQEWRRVLEELKRTPNDEVYKKLKVSFDGLKHVIEKQIFLDIVCFFIGMDKNDVLQTLNRSTQLPTLVIRILEEKSLVTVDENNKIQMHVLLQAMAREIIKRESSYMSDQ 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39584g00001 180 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 171 IPR044974 GO:0006952
Trme39584g00001 180 Gene3D - 17 101 IPR042197 -
Trme39584g00001 180 SUPERFAMILY "Winged helix" DNA-binding domain 87 175 IPR036390 -
Trme39584g00001 180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 112 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39584g00001 Trme-Chr39584 276 815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39584g00001 3 174 WRKY Transcription Factor Family AT5G45050 37.572 5.00e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39584g00001 - - mtr:11411578 233.032