Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme3957g00001 GAATCCTTTTCTGATGTTGTTGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAACTATATGGACCTGAATCCGATGTGTGGAGTGCCGGCGTTATTTTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCAGAAACTGAACCGGGGATCTTCCGACAGATTTTAATAGGAAAAATTGATTTTCAGTCTGAGCCTTGGCCTAGCATTTCGGACAGCGCAAAGGATCTAATTCGGAAAATGCTTGATCAAAATCCAAAAACAAGGCTAACAGCACATGAAGTACTCCGCCACCCATGGATTGTTGATGACAACATTGCACCTGATAAACCTATTGACTCTGCTGTTTTATCACGTCTGAAGCAATTCTCTGCAATGAATAAACTGAAAAAGATGGCTTTGCGTGTTATTGCTGAGCGGCTATCTGAGGAAGAAATTGGCGGCCTGAAAGAGTTATTCAAGATGATTGACACCGACAGCAGTGGAACCATAACATTTGATGAGCTAAAAGATGGCTTAAAGCGAGTAGGATCTGAACTTATGGAGTCTGAAATCCAGGATCTTATGGATGCTGCTGATGTTGATAAAAGTGGGACAATTGACTATGGTGAATTCATTGCTGCAACTGTTCATTTAAATAAGCTGGAGAGAGAGGAAAACCTGTTGTCAGCCTTCGCTTATTTTGACAAAGATGCTAGTGGTTACATAACCATTGATGAGATTCAACAAGCTTGTAAAGACTTTGGTTTAGAAGATATCCACATTGATGAAATAATCAAGGAAATTGATCAAGACAAT 804 0.4092 ESFSDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAETEPGIFRQILIGKIDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNIAPDKPIDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDTDSSGTITFDELKDGLKRVGSELMESEIQDLMDAADVDKSGTIDYGEFIAATVHLNKLEREENLLSAFAYFDKDASGYITIDEIQQACKDFGLEDIHIDEIIKEIDQDN 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme3957g00001 268 ProSiteProfiles Protein kinase domain profile. 1 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3957g00001 268 SMART efh_1 186 214 IPR002048 GO:0005509
Trme3957g00001 268 SMART efh_1 150 178 IPR002048 GO:0005509
Trme3957g00001 268 SMART efh_1 222 250 IPR002048 GO:0005509
Trme3957g00001 268 SUPERFAMILY EF-hand 142 268 IPR011992 -
Trme3957g00001 268 ProSitePatterns EF-hand calcium-binding domain. 159 171 IPR018247 -
Trme3957g00001 268 ProSiteProfiles EF-hand calcium-binding domain profile. 218 253 IPR002048 GO:0005509
Trme3957g00001 268 ProSitePatterns EF-hand calcium-binding domain. 231 243 IPR018247 -
Trme3957g00001 268 FunFam Calcium-dependent protein kinase SK5 13 108 - -
Trme3957g00001 268 CDD EFh 223 268 IPR002048 GO:0005509
Trme3957g00001 268 ProSiteProfiles EF-hand calcium-binding domain profile. 182 217 IPR002048 GO:0005509
Trme3957g00001 268 SMART serkin_6 1 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3957g00001 268 SUPERFAMILY Protein kinase-like (PK-like) 4 126 IPR011009 -
Trme3957g00001 268 ProSitePatterns EF-hand calcium-binding domain. 195 207 IPR018247 -
Trme3957g00001 268 Gene3D Transferase(Phosphotransferase) domain 1 1 108 - -
Trme3957g00001 268 Gene3D - 119 212 - -
Trme3957g00001 268 Gene3D - 129 268 - -
Trme3957g00001 268 ProSiteProfiles EF-hand calcium-binding domain profile. 146 181 IPR002048 GO:0005509
Trme3957g00001 268 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 268 - -
Trme3957g00001 268 Pfam EF-hand domain 223 250 IPR002048 GO:0005509
Trme3957g00001 268 CDD EFh 151 210 IPR002048 GO:0005509
Trme3957g00001 268 FunFam Calcium-dependent protein kinase 1 111 268 - -
Trme3957g00001 268 Pfam Protein kinase domain 3 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme3957g00001 268 Pfam EF-hand domain pair 151 211 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme3957g00001 Trme-Chr3957 55 2292 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme3957g00001 5 268 EF-hand Containing Proteins AT4G09570 81.061 6.47e-159 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme3957g00001 Pkinase 1.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme3957g00001 K13412 - gmx:547825 487.263