Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39547g00001 GAGTTAGCAAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCGCCTTATCTCAAAACAGTTTGTGTTTATGGAGGTGTTTCTTATGTTACTCAACAGAGTGCACTTTCACGTGGTGTTGATGTGGTTGTTGGAACTCCTGGTAGGCTGATTGACCTCATCAATGGGAACACACTTAGGTTGAATGAAGTTGAGTATTTGGTACTCGACGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTCATTTTGGAAAAGCTTCCACCTAAGAGACAAAGCATGCTTTTTTCTGCAACCATGCCTACTTGGGTCAAAAAATTGGCCAGGAAATATTTGAACAATCCATTGACTATTGATTTGGTACGCTGTTCTTACTTCAGGCTTCGATTCTCCAAAGATACATAG 414 0.4155 ELAKQVEKEIKESAPYLKTVCVYGGVSYVTQQSALSRGVDVVVGTPGRLIDLINGNTLRLNEVEYLVLDEADQMLAVGFEEDVEVILEKLPPKRQSMLFSATMPTWVKKLARKYLNNPLTIDLVRCSYFRLRFSKDT 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39547g00001 137 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 1 123 - -
Trme39547g00001 137 Gene3D - 1 125 IPR027417 -
Trme39547g00001 137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 121 IPR027417 -
Trme39547g00001 137 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 121 IPR014001 -
Trme39547g00001 137 SMART ultradead3 1 132 IPR014001 -
Trme39547g00001 137 CDD DEADc 1 122 - -
Trme39547g00001 137 Pfam DEAD/DEAH box helicase 1 110 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39547g00001 Trme-Chr39547 68 481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39547g00001 1 121 Eukaryotic Initiation Factors Gene Family AT1G72730 43.902 3.08e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39547g00001 - K16911 csv:101218035 226.868