Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme39545g00001 ATGCTTTCCAATAGAGAGTCAGCTAGACGCTCAAGACGAAGAAAGCAGGCTCATTTAACTGAGTTGGAAACACAGGTTTCTCAATTACGAGGCGAAAATTCTTCCTTGGTAAAGCGCCTTACTGATGTGAACCAGAAGTACACTGATTCTGCTGTTGACAACAGAGTACTGAAAGCTGATGTTGAAACGTTAAGAGCAAAG 201 0.4229 MLSNRESARRSRRRKQAHLTELETQVSQLRGENSSLVKRLTDVNQKYTDSAVDNRVLKADVETLRAK 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme39545g00001 67 PANTHER BASIC LEUCINE ZIPPER 63 1 67 - -
Trme39545g00001 67 MobiDBLite consensus disorder prediction 1 26 - -
Trme39545g00001 67 Gene3D - 1 51 - -
Trme39545g00001 67 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 1 46 IPR004827 GO:0003700|GO:0006355
Trme39545g00001 67 FunFam BZIP transcription factor 1 45 - -
Trme39545g00001 67 SMART brlzneu 1 56 IPR004827 GO:0003700|GO:0006355
Trme39545g00001 67 SUPERFAMILY Leucine zipper domain 1 47 IPR046347 GO:0003700|GO:0006355
Trme39545g00001 67 Pfam bZIP transcription factor 1 47 IPR004827 GO:0003700|GO:0006355
Trme39545g00001 67 Coils Coil 5 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme39545g00001 Trme-Chr39545 303 646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme39545g00001 1 67 bZIP Transcription Factor Family AT5G24800 61.194 2.45e-22 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trme39545g00001 bZIP_1 2.3e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme39545g00001 K25784 - gmx:100170702 111.694